Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2282 ATGTATGCACTGAAAAAAGGACCCACCAGTCTTGCGTCATGCGGGTCGACTGGTGTACCTGCAGCTCCTGTGTATTACCCTACTGATGATGAGTTCAAGGATCCATTGGAGTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCTCCTAAGGGTTGGAATCCTCCTTTTGCTTTGGATCTAGATACTTTCACTTTCCCCACGAAAACACAAGCGATTCACAAGCTCCAGACTCGTTCTGCTGCTTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTGCAGGACCATTGTGGTAAGAAGTCTAAAAAGAGGGTTGTGTTTGAAGGTGAGGATTTGGACTTGTGCAAGTTGTTCAATGCGGTTAAGCGGTTCGGCGGGTACGATAAGGTTGTTGATGGGAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCTGGGAAGGTTTCAGACTGCGCTAAGCATGTATTGTGTCAGTTGTACCGTGAGCATTTGTATGATTATGAGGAATTCTATAATAGGATGAATCAAGGGATGGCTCGAAGTTGTAAGAAGGAGGAGCGAGAGGAGAGGAAGAGTAATCATGGGGTGCAGTGTACGACAGCATCCAAGAGGCAACAACGGAGTGGCAGTGGTTTGAAAGTTAAGGATTGTAAAGTACATTTAGAGGAAGAACATGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCATGGGGAAGTCATGCTTTTGTGTGATAGATGCGATAAGGGCTGGCATATCTATTGTCTTTCCCCTCCATTGGAGCAAATTCCCCAAGGGAACTGGTATTGTTTCAGCTGCTTGAATTCTGATACGGACAGCTTTGGTTTTGTACCTGGTAAGCACTATTCTCTGGAAGCTTTTAGACGAATGGCTGACCGGTCAAGGAAGAGATGGTTTGGAGCAGGACCTGTTTCAAGGATGCAGGTAGAGAAAAAATTCTGGGAGATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACATCTGTCTTTGGGAGTGGATTCCCACGTGTTACTAATCAGAAACCACAATCTATTGATGAAAAGTTATGGCAAGAATACTCAACAAATCCATGGAATCTTAATAACTTGTCAAAGTTGAAAGGTTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTTCCATGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGAAGTGAAGCTAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTACTTTTTCAGCTTGTTACTATGCTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTCATAACCTTCCCCAGATCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTCGCTCCAGCTGACTGGCTACCATTTGGTGCATTTGCTGCTGATCTCTATAAGCGGTATCACAAACCTGCTGTCTTGTCTCATGAGGAGCTTATTTGTGTAGTAGCCCAGTATGGTGATGTTGATAGCAGAAAATCTTCTTATTTGAAGAAGGAACTGTTGAGAATATCAGATAAAGAGAAGTCTTGGAGAGAGAAACTATGGAAAAATGGTATAGTTAAGTCTTCTTGCATGGCTCCTCGAGAATGTCCACAATTTGTGGGAACTGAGGAGGATCAAACATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCAGACCATCTTCTTTTGTCTGCCTGGAGGTAAATGGATAA 1947 0.433 MYALKKGPTSLASCGSTGVPAAPVYYPTDDEFKDPLEYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQTRSAACDSKTFELEYSRFLQDHCGKKSKKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFLRPAGKVSDCAKHVLCQLYREHLYDYEEFYNRMNQGMARSCKKEEREERKSNHGVQCTTASKRQQRSGSGLKVKDCKVHLEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLEQIPQGNWYCFSCLNSDTDSFGFVPGKHYSLEAFRRMADRSRKRWFGAGPVSRMQVEKKFWEIVEGSVGEVEVMYGNDLDTSVFGSGFPRVTNQKPQSIDEKLWQEYSTNPWNLNNLSKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFAADLYKRYHKPAVLSHEELICVVAQYGDVDSRKSSYLKKELLRISDKEKSWREKLWKNGIVKSSCMAPRECPQFVGTEEDQTCIICQQYLYLSAVVCSCRPSSFVCLEVNG* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2282 648 SMART bright_3 90 184 IPR001606 GO:0003677
Aev05g2282 648 ProSitePatterns Zinc finger PHD-type signature. 240 284 IPR019786 -
Aev05g2282 648 SMART PHD_3 239 285 IPR001965 -
Aev05g2282 648 Gene3D Cupin 139 528 - -
Aev05g2282 648 ProSiteProfiles Zinc finger PHD-type profile. 237 287 IPR019787 -
Aev05g2282 648 Pfam PHD-finger 239 286 IPR019787 -
Aev05g2282 648 SMART ARID_2 89 179 - -
Aev05g2282 648 SUPERFAMILY Clavaminate synthase-like 374 558 - -
Aev05g2282 648 Pfam JmjC domain, hydroxylase 410 526 IPR003347 -
Aev05g2282 648 ProSiteProfiles ARID domain profile. 89 183 IPR001606 GO:0003677
Aev05g2282 648 ProSiteProfiles JmjC domain profile. 377 543 IPR003347 -
Aev05g2282 648 CDD ARID 91 179 - -
Aev05g2282 648 CDD PHD_RSF1 240 284 - -
Aev05g2282 648 ProSiteProfiles JmjN domain profile. 22 63 IPR003349 -
Aev05g2282 648 SUPERFAMILY FYVE/PHD zinc finger 230 287 IPR011011 -
Aev05g2282 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 299 IPR013083 -
Aev05g2282 648 SMART JmjN_1 21 62 IPR003349 -
Aev05g2282 648 SMART cupin_9 377 543 IPR003347 -
Aev05g2282 648 Pfam jmjN domain 23 56 IPR003349 -
Aev05g2282 648 Gene3D Cupin 9 123 - -
Aev05g2282 648 PANTHER LYSINE-SPECIFIC DEMETHYLASE 20 645 - -
Aev05g2282 648 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 20 645 - -
Aev05g2282 648 SUPERFAMILY ARID-like 72 193 IPR036431 GO:0003677
Aev05g2282 648 Pfam ARID/BRIGHT DNA binding domain 98 179 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2282 Aev-Chr5 23139310 23143372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2282 22 88 JUMONJI Transcription Factor Family AT1G08620 54.930 4.11e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aev05g2282 JmjC 2.5e-43 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2282 K11446 - gmx:100789512 1152.12