Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1972 ATGGCTAGGCAATTTGTGAGCATTGCTGGGGTGGGAGAGACTACAACACATGCTGCAAAGTGTGTTTTTCACCTCAGGACCACAGTTAGTCCTATAGACAGGCCTTCAATCCCTTTAGATGGTATTTCACCAACTGCTTTCAAGGACATCCTCAATGACACATTGAATGCTGATTATCTCATAGATGTTGTGGGGCTTTTGACTGGAATGAGTCAGCCTAAAGATTATGATAGAGATGGAAAGTCAGGAAAAATGGTGGTAATAGAGCTCACAGCTGAAAATGAGAAACTTGAGTGCGCCCTTTTTAGTGAGTATGTTGATCAGATGTGCTCTTTGGTTCGTGCCACACCTTTGGATTTGCCTATTGTTGTTTTGCAGCTGGTCAAGCTCAAAAGTTTTAGAGACAATGTTGGATTACAAAATGTAATGTGGGCAACCAAGATTATGCTTAATCCAAATCTTGAAGCAGCTGTTAAGTTTAAAGATAGTATCTCAACTGAAGGTTTGCCCCCTGCTCATAGTATAAATATCTATGTTGAACCTCCAAAAGTGTCTTTGGAGGATGATTTTATGAAGAATAACCCAAAGGCAACTATTGATTTCCTAAGTGCCAATGAACAATTTGGGACATTTGTTGTTTTGGGGACCGTTAATGCTATTGCTGAGGATGGTCCATGGTGGTACCCTGCATGCCGCTGTGGAAGGGCTGTTGTACCAGATTCTGGTATTTACTTCTGTGGTTTTTGTGACACACATGTGTTTACTGTGTCCCCAAGGTTTAAATTAATGATAGAGGTTGAAGACTCTACTGGTACTGCTATTTTTGTGCTATTTGAAAAGGAGTGTATGACATTGTTCAAGAAAACATGTGCTGAAGTTTTTGTTGAACATATGAAAAATCCAGAGAATATTAGGAACAATGTTGCTATTGTGTCAATGTTTTGTTTGGATGGGGCTGATCAAACACCAATGAAGCCTACATTTACACCTTATTTCACTGATTCAATGGGGTTGGAGGACATTTGTTCTGAAATGTGCACAACAGTTGGAAAACAAATGATTCGTAAGACTGGGGTCAGTATTATTGCTGATGAGGACAGTGAAGTTGTCCCTAATACTGTGTTGGCCCCTACTGGGCCTTCATTGGATGATGATAAATCTGGCTTGATTCGTTCTGGGACTGTTAATCCTGCAACGCGCAATTTGGAGGCAGAATTTAACAAGGTTGATGTTGGGAGTTCTAGAGCTGACAAGATGAAATCAATCAAAGTTGAGGAGTAA 1281 0.4036 MARQFVSIAGVGETTTHAAKCVFHLRTTVSPIDRPSIPLDGISPTAFKDILNDTLNADYLIDVVGLLTGMSQPKDYDRDGKSGKMVVIELTAENEKLECALFSEYVDQMCSLVRATPLDLPIVVLQLVKLKSFRDNVGLQNVMWATKIMLNPNLEAAVKFKDSISTEGLPPAHSINIYVEPPKVSLEDDFMKNNPKATIDFLSANEQFGTFVVLGTVNAIAEDGPWWYPACRCGRAVVPDSGIYFCGFCDTHVFTVSPRFKLMIEVEDSTGTAIFVLFEKECMTLFKKTCAEVFVEHMKNPENIRNNVAIVSMFCLDGADQTPMKPTFTPYFTDSMGLEDICSEMCTTVGKQMIRKTGVSIIADEDSEVVPNTVLAPTGPSLDDDKSGLIRSGTVNPATRNLEAEFNKVDVGSSRADKMKSIKVEE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1972 426 PANTHER REPLICATION FACTOR A 1, RFA1 20 294 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev05g1972 426 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 294 - -
Aev05g1972 426 Pfam Replication factor-A C terminal domain 211 306 IPR013955 -
Aev05g1972 426 SUPERFAMILY Nucleic acid-binding proteins 44 170 IPR012340 -
Aev05g1972 426 SUPERFAMILY Nucleic acid-binding proteins 205 304 IPR012340 -
Aev05g1972 426 CDD RPA1_DBD_B_like 62 163 - -
Aev05g1972 426 Gene3D - 36 170 IPR012340 -
Aev05g1972 426 Gene3D - 188 314 IPR012340 -
Aev05g1972 426 CDD RPA1_DBD_C 202 315 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1972 Aev-Chr5 18255955 18258989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1972 49 282 Core DNA Replication Machinery Family AT5G08020 23.108 1.08e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1972 - - adu:110276578 273.478