Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1963 ATGGAGAAAGATCACAACTATTCGGCACCCATGCCTCCTAGTTTCAACACCCTGGACTACTCTCTTGATCACCATAATCATCTCTATCCACAAAATCAACAGCATCTCATGAAGTTTCGAGTTGGCGAAACGTCCGGCGAACACAACAGCAACAACGGGATGGTGGATTACATCCCTGAACAACAACTACAACCGCCACAAATATCGCCACAAGCCCCGTGCTTTTATGGTACTCATGTCTCTTCTTTTGACAAACTAAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGCTTGCCTTAAATCAATTAGGCAAGGCTTGCGAAGAAGAACCCGGGATCGGGATCGATCCCGTGTACTTCCTCAAGTTTCCTGTGCTAAACGGAGACAAGATGGAGGACCACCAAAACTTGGTGGTGAACCCAGAAAGTGATTGTGGTGGAGTTGGAGAGGCAGAAAATAATAATAATGATGATGGTGAGAGGTTCAACAGCAACAACGTGGTGAGCGTGGAAGATCAAGAAGAAGGAATGATAAGAGAGGAAGATCAAGAGATGACTCGGGTTTCTGATGAAAACAACTCGGTGCAGCTGCGATTTGTTGGGCACGATGAAGAACTCGAGAAGAAGTGTAATAGGGTGGTGCAGGAGAACAATAAGAACAAGAGGAAGAGACCAAGAACGGTTAAGACGAGTGAGGAGGTTGAGAGCCAGCGCATGACTCACATCGCGGTCGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTCAGATCCCTCATGCCTGGCTCCTACGTGCAAAGGGGTGATCAAGCTTCTATAATTGGAGGAGCTATAGAGTTTGTGAGGGAACTAGAGCAACTTCTTCAGTGCTTGGAATCACAAAAAAGGAGAAGACTTCTAGGGGAGGCACAATCAAGGCAGGGAGTTGGGGAATCGGGCCTTGCAGCACAACAGCAGCAGCCTCCATTCTTTGCATCACCTTTGGCGGATGAGCAGATGAAGCTTGTGGAGCTGGAGACCGGCCTACGCGAAGAGACGGCGGAGAGCAAGTCGTGTTTGGCTGACGTAGAAGTGAAGCTTCTGGGATTCGACGCCATGATCAAGATCCTATCAAGGAGGAGGCCAGGCCAGTTGATCAAGACCATTGCTGCCCTTGAAGATCTTCAGCTAATTATTCTTCACACCAACATCACCACCATAGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCGGAAGACATAGCCAGCTCTGTTCAGCAGATATTCGGTTTCATCCATGCAAACACTAGCATGTAA 1341 0.4735 MEKDHNYSAPMPPSFNTLDYSLDHHNHLYPQNQQHLMKFRVGETSGEHNSNNGMVDYIPEQQLQPPQISPQAPCFYGTHVSSFDKLSFADVMQFADFGPKLALNQLGKACEEEPGIGIDPVYFLKFPVLNGDKMEDHQNLVVNPESDCGGVGEAENNNNDDGERFNSNNVVSVEDQEEGMIREEDQEMTRVSDENNSVQLRFVGHDEELEKKCNRVVQENNKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQGVGESGLAAQQQQPPFFASPLADEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFGFIHANTSM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1963 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 306 IPR036638 GO:0046983
Aev05g1963 446 CDD ACT_UUR-ACR-like 372 436 - -
Aev05g1963 446 Gene3D - 230 305 IPR036638 GO:0046983
Aev05g1963 446 Pfam Helix-loop-helix DNA-binding domain 240 291 IPR011598 GO:0046983
Aev05g1963 446 SMART finulus 245 296 IPR011598 GO:0046983
Aev05g1963 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 290 IPR011598 GO:0046983
Aev05g1963 446 MobiDBLite consensus disorder prediction 220 241 - -
Aev05g1963 446 Coils Coil 334 354 - -
Aev05g1963 446 PANTHER TRANSCRIPTION FACTOR FAMA 31 446 - -
Aev05g1963 446 CDD bHLH_AtFAMA_like 242 309 - -
Aev05g1963 446 PANTHER TRANSCRIPTION FACTOR FAMA 31 446 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1963 Aev-Chr5 18103569 18107479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1963 41 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.741 7.58e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev05g1963 HLH 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1963 - - gmx:100813515 589.341