Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1946 ATGACTTCGTCCTTGGGTCCGCAAATGGCCCTTTTGACCATGCAGATATCAATGCCCTTACCTCTTTTAGGAGGTTTTGGTTACCGCTCAATCCTACACGGGGTTAGATTAAATGGTGAAGTCGAAGTCATCCCTCATCTCATGCTGGAACAGTGCCCTGTCAACCAAATAGAACTACCAACCCAACCACTTGAGGACACCACAAGTAACATTAATGTTAACAATATGGAACATACTAATATTGTTGGAAATGAAATCTCTCTACCTGTTGAGGATAATTTAGTTCCTGGACCATTAGCCATCATTAACTATAACGATGAAAACAATCTTCCCCTGCCACCTTTGCATGGAATACCTTTGCTCAACCGACAGCCACAATTATTGGAGCGTATCCAACAATTCTTGTTGTCTAATGGAACTGGTGAGGATGTTGTGTCTTGTGATAGGCCAATCAAAAAGCATCACATAAAGGCTTATGATTTGCTCCTTCCTTCAGCTTTTGTTGCTAAAGCTTTCCTAAGCCGTGCAACAATTGTCCATGTTTTCAGCACTATTGGTTATATATATAACATGTATCTCCGCTGGACACCAAGACATAAGAATGAGGTGTATTTGTCTCGTGGATGGAAACGTTTCATTGATGAACACAACTTGAAAAAGGGAGATACAATCGTAATGAAGGGAGATCGTATTCAATTAATTGCAAGGACTGTCGAGGTTATGTTATTTCAAAAAGAACTTACAGAAGGTAATGCATATTTCATAACCAATGTGGAACTAGCTGAAAACGACGGTAGATTCCGGCCAACCATCCATCCTTACAAGGTGTTTTTTAAGGAAGATACCCAGATCAGGTCCATTCAGGATACAACAATCCCATTACATGGATTTAACTTCATGTCTAATAATGAAATACTACAGTCTTCAAAAGAGGATGACCATCTTATAGATGTCATTGGACTCGTCGTTGCTAAAGGTAATTTACGAGAGTTTTCTAAAGGTGCAAGCTCTGCTCACTACATTAATCTGGACTTGGATGATAAAATTAGTCAGCAAACCATACGTTGCACCCTATGGGAAAGTTATGCGAAAGATTTCATTGCCCACTTGGACCAAAATCCAGCTCAGGATTATGTTATCATACTGCAGCTAGCTAAACTCAAGTTTTTCGATGGTAAGATGGGTGTGTCAAACACAAATTACACCTCCAAATTATACATCAATGATGATATACCTGATATAAGTCAATTTAGGCACAGGTTAGGACTCAATGAGGTAGGTTCTCTGACTGAAATTTCCCAAATTGAAAGTCATCAAGAATACTCGCTTGACCATGACCTTCTTAATTCAACTGCCTACAAGTCACTTAATGAGTTGAAGGAACTTATGGAGGGTGGAGAGAAACCAACTGTGCCGACCGAGTTAGATTCATTAAAGGATAAAAAGTTTTTATTCAAAATATCTGTCAAGTTGGACAATATAAATTCCATTCAGCCCAATTCAATTGATGGTATTGTTAAACTTTGTCATGACAAGAATCTTATTGATGCATTCATTGAAAAGTATAGGCTCGATGAGGTCAACCTGTTGGAGGATGTTTCGGACATACAGAGCAACGCTCTTGATATGGGTTCCAACCTATTGTCGCAAGATCAATCCTGCGAAACCCCGAGCATGATCGACGTCACTCCTCAAAAGTCAATCTCCACTGACCCATGGATAGCATCCCCCAACGAATGTATTGAACCGCAACCAATTGGTTCATCATCAACAAAGTTACGGAAGGGAGATGGTAGGCTGAGAAGCACAAGAACATCGGACACCAACACACAACCTGAGATTTGTTCCACTAATGAATTAGCATGTAATATTGAACTTTTACCAAGTGGAACAAACACTGTATCCGACAATTACACCTCAGCAATTGATCCACTTCAAGAATACGAAGATTTGGTTTTACCCGATGAATTTTTGAAAGATCGAGCATTGAGACTTATAGAAGATCTTCTGCAGTCTAATGCTCCTCTGGTGGAGGAACCAAAGCTATCCCATCACTCATCTCCGTCCGGGGAAGCCTTACCCCCTAGGGATGATGTCGAAGGAACCGACCGAAATGAAGCTGACTCTTCTTCCTCTGAGGACGATAGTTCTCAATATCGGATGAAAAGGAGAGGAGAAGATGCTGGCAGTGCTCTCAGAACTCCCCATGTACAATCACAATCCGGAAGTACTGGGGTTGTTCTCTCAGAAGCGGCTGCTTCTAAAGCTGCAGAAATGGCTCCTCAGAGCTTGAGAATGGAGGAGATACAACAACAAATTGTGGGTGCCTCTGAAGAGCAACCACAGATGCCACAAGAAGATCATCAACAACAACAACATTAG 2382 0.4106 MTSSLGPQMALLTMQISMPLPLLGGFGYRSILHGVRLNGEVEVIPHLMLEQCPVNQIELPTQPLEDTTSNINVNNMEHTNIVGNEISLPVEDNLVPGPLAIINYNDENNLPLPPLHGIPLLNRQPQLLERIQQFLLSNGTGEDVVSCDRPIKKHHIKAYDLLLPSAFVAKAFLSRATIVHVFSTIGYIYNMYLRWTPRHKNEVYLSRGWKRFIDEHNLKKGDTIVMKGDRIQLIARTVEVMLFQKELTEGNAYFITNVELAENDGRFRPTIHPYKVFFKEDTQIRSIQDTTIPLHGFNFMSNNEILQSSKEDDHLIDVIGLVVAKGNLREFSKGASSAHYINLDLDDKISQQTIRCTLWESYAKDFIAHLDQNPAQDYVIILQLAKLKFFDGKMGVSNTNYTSKLYINDDIPDISQFRHRLGLNEVGSLTEISQIESHQEYSLDHDLLNSTAYKSLNELKELMEGGEKPTVPTELDSLKDKKFLFKISVKLDNINSIQPNSIDGIVKLCHDKNLIDAFIEKYRLDEVNLLEDVSDIQSNALDMGSNLLSQDQSCETPSMIDVTPQKSISTDPWIASPNECIEPQPIGSSSTKLRKGDGRLRSTRTSDTNTQPEICSTNELACNIELLPSGTNTVSDNYTSAIDPLQEYEDLVLPDEFLKDRALRLIEDLLQSNAPLVEEPKLSHHSSPSGEALPPRDDVEGTDRNEADSSSSEDDSSQYRMKRRGEDAGSALRTPHVQSQSGSTGVVLSEAAASKAAEMAPQSLRMEEIQQQIVGASEEQPQMPQEDHQQQQH* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1946 793 Gene3D - 291 427 IPR012340 -
Aev05g1946 793 PANTHER REPLICATION FACTOR A 1, RFA1 222 420 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev05g1946 793 CDD RPA1_DBD_A_like 211 284 - -
Aev05g1946 793 MobiDBLite consensus disorder prediction 579 612 - -
Aev05g1946 793 MobiDBLite consensus disorder prediction 696 730 - -
Aev05g1946 793 CDD RPA1_DBD_B_like 317 421 - -
Aev05g1946 793 ProSiteProfiles B3 DNA-binding domain profile. 161 246 IPR003340 GO:0003677
Aev05g1946 793 MobiDBLite consensus disorder prediction 733 748 - -
Aev05g1946 793 PANTHER BNAC07G49340D PROTEIN 222 420 - -
Aev05g1946 793 CDD B3_DNA 140 227 IPR003340 GO:0003677
Aev05g1946 793 SMART B3_2 147 246 IPR003340 GO:0003677
Aev05g1946 793 Gene3D - 211 290 IPR012340 -
Aev05g1946 793 MobiDBLite consensus disorder prediction 677 793 - -
Aev05g1946 793 Pfam B3 DNA binding domain 154 229 IPR003340 GO:0003677
Aev05g1946 793 SUPERFAMILY Nucleic acid-binding proteins 297 423 IPR012340 -
Aev05g1946 793 SUPERFAMILY DNA-binding pseudobarrel domain 150 226 IPR015300 -
Aev05g1946 793 MobiDBLite consensus disorder prediction 765 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1946 Aev-Chr5 17895571 17919823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev05g1946 B3 6.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1946 - - adu:107461640 244.202