Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1849 ATGGCGGCGATGATGCAAGGGGTGCAGAAGAACACGCTATACGTGGGTGGTTTAGCTGAGGAGGTGAACGAGTCGATACTGCACGCGGCGTTCATACCGTTCGGGGACATCAAGGATGTGAAGACGCCGCTCGACCAGGCCACTCAGAAGCACAGGTCATTCGGCTTCGTCACTTTCCTTGAGAGGGAGGACGCCGCCGCCGCCATGGACAACATGGACGGTGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAGCGCATCAAGGGTGGTGAACAGGGCTGGGCTGCTCAACCAATTTGGGCTGATGCCGATACTTGGTTTGAGCGGCAACAACAAGAAGAAGAAATGCGTCGTCTTGAAACAGAGAATCGAGCTGCAATGCAGGCTGCAGAAGACTTGCGCAGGAAAAAGGCAGCCGAAGAGCGAGAAGGGGAAAAGGAAGAGGAAATTGATATCAAGGATGATCCTATGGCAAAGGCTGAAGCAGAGACACAAGTGATCGCTCGTGTAGTGGTAGCTCTTGAACAAGGACGTGCACCTCCACCACCGGTGAACAAAGAAGCTCAGAGGTACCGTGACTTCAAGTTCGAGGAACCGCTAGTGTTCAAAGGGGAGCTATTTCCAACCTGTTTTACGTGCGGGCAGGTCAGCTACATATCCCGAACATGCCTAAGGGCAGGCAATCAGCGACAGGCTCGCATGTTCGCCATATCTGCTGAAGGCGTGGAGGCTAGTGGTCTGATCCAAGTCGAGTCAGGGAGTTCTTCATTGGAAATGATCTTCTGGGTGGTCTCCAAAAGACTGGCTGAAGGAGAGAACCGGGATTGTCAGTTGCCTTTCACTTTTGTTGCTGAGGAGGGTCAATCGACTCAGAAACAAACTTTGTCACCAAAGAATCGAAAGATTGGTGGTAGATAA 933 0.5316 MAAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLETENRAAMQAAEDLRRKKAAEEREGEKEEEIDIKDDPMAKAEAETQVIARVVVALEQGRAPPPPVNKEAQRYRDFKFEEPLVFKGELFPTCFTCGQVSYISRTCLRAGNQRQARMFAISAEGVEASGLIQVESGSSSLEMIFWVVSKRLAEGENRDCQLPFTFVAEEGQSTQKQTLSPKNRKIGGR* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1849 310 CDD RRM_PPIE 13 85 IPR034168 GO:0003723
Aev05g1849 310 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Aev05g1849 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Aev05g1849 310 Coils Coil 114 155 - -
Aev05g1849 310 PANTHER TRANSFORMER-2-RELATED 6 169 - -
Aev05g1849 310 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 6 169 - -
Aev05g1849 310 SMART rrm1_1 12 85 IPR000504 GO:0003723
Aev05g1849 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
Aev05g1849 310 Gene3D - 3 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1849 Aev-Chr5 16422981 16428981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1849 11 89 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.52e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1849 - K09564 gmx:100809447 269.24