Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1827 ATGCCAATGATAGATGGGGAAGATCCGAGTATATGTCATTATTATCATCAAGCCACCCCTGGCTTAGAGGAACATGCAGATTGTGCTGTGTGTCTCTGTGAAATTGTAGAAGGAGAGGAGATTAGAGTGTTGAGATGTGACCATATCTTTCACAGAGAGTGTTTGGACCGATGGGTTGGTTTCAAGAACCCTACTTGCCCTCTTTGTAGACAATCATTAGGTCCAAGAAGGAATATTGATGAGCTTGGAGCTGAAGTTCTATTCTTTGAATTTTGTTCAATCCGCAATGATGACCGTGACAGATGGTGGCTACGTTAA 318 0.4245 MPMIDGEDPSICHYYHQATPGLEEHADCAVCLCEIVEGEEIRVLRCDHIFHRECLDRWVGFKNPTCPLCRQSLGPRRNIDELGAEVLFFEFCSIRNDDRDRWWLR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1827 105 SUPERFAMILY RING/U-box 22 79 - -
Aev05g1827 105 Pfam Ring finger domain 27 70 IPR001841 -
Aev05g1827 105 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 98 - -
Aev05g1827 105 ProSiteProfiles Zinc finger RING-type profile. 28 70 IPR001841 -
Aev05g1827 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 77 IPR013083 -
Aev05g1827 105 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 7 98 - -
Aev05g1827 105 SMART ring_2 28 69 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1827 Aev-Chr5 16150811 16151128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1827 26 73 C3H Transcription Factor Family AT1G15100 54.167 6.49e-14 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1827 K16282 - vvi:104878973 134.806