LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev05g1701	ATGGCCACTCCCAAACACACCTCCACTTTCACTCACGTCGCCTCAAGGGAGCTCAATTCCTTCCGAGTTCGTAAACGGCCTCTGATGGATGGATTTTTCATTGGATTCGCAGAACAAGGAGGTCTTGCAGTTCAGCACAGCGCCGAAAACACCATTCCGTTGTCTCTCTCATTCTGCAAGACCTCCAAATATTCACACATTCTGGCTTTATCTGATGAGGATGGATACATGACCTTGCTCAAAACACGTTTCCAATTTCCTGAAACTTCATCCTTTGAAGATAATGCAGAGAAAGCGAAGATTTGTGATTGGGTTTCACATCATAATGCTGTGTTTGATGTCTGTTGGATTAAGGATGATACACAGATTCTCACAGCTTCGGGTGATCAAACGATGAAGGTGTGGGACGTACAAGAACAGAAATGTATTGGAGTGTTGACAGGGCACACGGGAAGCGTGAAATCTGTGTCTTCTCATCCAACTAATGATGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTTTGGGACTTAAGATGCAAATCCAATACTAAGGGTAGGCATGGAGAAGTTAGAATATGTTCAACAGCTGCTGTCAAAGGAGCACATATTTCAACTCAGATAAAAAGGGTCAGAAAGAGCAAGACTAATTCCATGAGCATTACATCTGTCCTTTATCTTAAGGATCAGGTTTCCATAGCTACTGCTGGGGCAGTTGATAGTGTGTTGAAGTTTTGGGATACTAGAAATTTGAAGAGTGTTGTCACACAAGCATGTCCACGTCCTCCATCAACAGAAAAGGAAAGATTACATGGTATATCTAGCTTGTCCCAAGATGAGAATGGTCTTTTGCTTTCAGCATCCTGCATGGATAACTGTGTTTATCTTTATAACACCCTTCAACTTGAAAAGGGTCCTTTCAGATCTTTTCATGGATGTCGAATAGAATCATTTTTTGTTAAGTGTGCAATTAGTCCTGATGCATCTCAGATAGTCTGTGGTTCTAGTGATGGAAAGGCCCATGTCTGGCAGGTCAACAAGCCTCAAGAGATTCCTGTAATTTTGAAAAGTCATGATGGTGAAGTTACTGCAGTTGACTGGTGCCGATCTGATGTTGGTAAATTAGCAACTGCTTCTGATGATTTCACAGTTCGGATTTGGAATAAAACCAATTATATTACTGATAAAAAGACAACGTGTTCCATCCGAAGAAGAATAATGGCAATGCCTAGAACAGAATACGAAATGTTATTAAGAAATGAAGAAATGTGTTCCAAGTCAACAGGCAAATCCATTGAAGCTCCTAAACTCCCACTTAACATGGGCAGTCCAGTCACACCAACTAAAATGCTTGCATCTGAAGGCCATAAGAACCAGATATCCTCAGGATTAGATCCAACCAGATCATCTGAAAAAACTCCAGAGTCTGCTTTGAAGAGCCCCTCATCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACGATCCGCGATTACTTTTCAGCATCTTAA	1515	0.4125	MATPKHTSTFTHVASRELNSFRVRKRPLMDGFFIGFAEQGGLAVQHSAENTIPLSLSFCKTSKYSHILALSDEDGYMTLLKTRFQFPETSSFEDNAEKAKICDWVSHHNAVFDVCWIKDDTQILTASGDQTMKVWDVQEQKCIGVLTGHTGSVKSVSSHPTNDDIIVSGSRDGSFCLWDLRCKSNTKGRHGEVRICSTAAVKGAHISTQIKRVRKSKTNSMSITSVLYLKDQVSIATAGAVDSVLKFWDTRNLKSVVTQACPRPPSTEKERLHGISSLSQDENGLLLSASCMDNCVYLYNTLQLEKGPFRSFHGCRIESFFVKCAISPDASQIVCGSSDGKAHVWQVNKPQEIPVILKSHDGEVTAVDWCRSDVGKLATASDDFTVRIWNKTNYITDKKTTCSIRRRIMAMPRTEYEMLLRNEEMCSKSTGKSIEAPKLPLNMGSPVTPTKMLASEGHKNQISSGLDPTRSSEKTPESALKSPSSVLNPPSSLKRTIRDYFSAS*	505

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev05g1701	504	ProSiteProfiles	Trp-Asp (WD) repeats profile.	357	390	IPR001680	GO:0005515
	Aev05g1701	504	Pfam	WD domain, G-beta repeat	141	179	IPR001680	GO:0005515
	Aev05g1701	504	Pfam	WD domain, G-beta repeat	106	136	IPR001680	GO:0005515
	Aev05g1701	504	Pfam	WD domain, G-beta repeat	322	345	IPR001680	GO:0005515
	Aev05g1701	504	Pfam	WD domain, G-beta repeat	356	390	IPR001680	GO:0005515
	Aev05g1701	504	Gene3D	-	189	316	IPR015943	GO:0005515
	Aev05g1701	504	ProSiteProfiles	Trp-Asp (WD) repeats profile.	146	181	IPR001680	GO:0005515
	Aev05g1701	504	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	146	181	-	-
	Aev05g1701	504	SMART	WD40_4	350	390	IPR001680	GO:0005515
	Aev05g1701	504	SMART	WD40_4	305	346	IPR001680	GO:0005515

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev05g1701	107	312	U-box Gene Family	AT1G04510	24.402	2.19e-09	57.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev05g1701	K11790		-	gmx:100819114	710.679

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