Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1468 ATGTTGAATGTTGATGTGACTGGTAATAAGAAGAGGAAGAGGTGTGGGAGGGTTTTTAGGTTCAAGAATTTTGGTGAGCCAGGGTACCCTGTTATGTTCACAGGGCCATTTCGTGAGAATGTGAATGCTTTGCTTGAATATGCTAATTTGGAGAGGAATTTAGGGTTAGGGATGCCTATTTGGTCTTTTCAACTTGAAGTTCATCATCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAGCCAATTGAGGCATCCTTGAATCGCCATTGCAAGCATTGTCAATATGTTGGGTGGGGAAACCATTTCATATGCAACAAGAAGTATCACTTCTTATTGCCTTCGAAAGAGGCATTAGGTACCTGCACGAGTTGTGAAGGGTGCTGTGATGCAATTGCCACAATGAACAATAGTAATAATAATAATAATAATAATGGTAAGTCCAAATTAATTGAATTACAAGGCCATATGATGCATGGTGTTTTTCACTCTAATGGTTTCGGCCATTTGCTATGTGTTAATGGCTTGGAAACGGGTTCCAATCTTGCTGGGAATCAAATCATGGACTTTTGGAATCGTTTGTGTATTGCATTGCAAGCAAGGAAAGTGAGTTTGAATGACATATCACAAAAAAGAGGAATGGAACTAAGGCTTGTGAATGGAATAGCATACAGTGAGCCGTGGTTTGGTCGATGGGGCTACAAATTCGGAAGAGGGTGCTTTGGTGTGACCCAATCAATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCCTTGTACTTACTCACACACCACATTGCCAATTCCAACAACAATAACAACAATGACATAACCCTTATTTTCTCAAGGTACCAAACACTTTCGGACCAATCTCTTGTGACCCTTGGTGACCTATTTCGTTACATGCTAGACCTAAGGTCACGCCTACCCCGTGACACATCATCATGCATCGATATTATGAATGGGAACGGGAAGGAGTACAACACAAGTTCCTTGGTTGAGACCAATTGCCGTTGGTCACCAAAAAGGATTGAAATGGCAACTAGGGTAATTGTTGAGGCATTGAAAAGAACCGAATTTAGATGGATCTCAAGGCAACAAGTTAGGGATGCAGCACGTGCCTACATCGGAGACACGGGTTTATTGGATTTTGTGCTTAAATCACTAGGGAACCACATTGTTGGCAACTACTTGGTTAGAAGAAGCTTGAACCCTGTTACTAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATAATGTGTATCCTTCTCATCATGAAGGTAATAATAACAACAACAAAGTTAAGAGTAAGTACAAGATTACAAGGGCTCAATTAATGAAGGACATGCTTTATTTGTACAAGTATATCCTAATTGACCCAAAACCAATTATGGGTTCAGAGTTTCTAAGTGCTATACCATTGGCATCAAGGATAATTCTTGACACAAAGCATTTAATCAAGGACTATTTTGGGGATGTTCCTAATTTTCAAGTTGAATTGGGATGTGAAGGGAAATTCAACCTTTATTGTACAATTTTGTTGAGGAACAATAATTTGGGAATTGATGAGTGTTTAACCAAGGCTATGATGGCACCTTATGAGTGCATCACATTGAAGAGCAATTCAACAATCAATGATTTGAAGTTGGAAGTTGAAAGGAGTTTTAGGGAAATCTATTGGGGATTAAGGAGTTTTGTGGTGGAATCAATTGGGAATTTTGGTAACAATAGTGGGAATGAGATGGTTTTTGGGGTAATTGAAGTTGGTGGAAAAGTTGTGGTTGAAGGTTGGGTTAGTGACATGGGAATAATGAACATGATTGGGGAAATATGTGAGAGTGATCCAAGAAATGGGATTGTTGAGTGCCCTTGTGGAACTAAAGAGGATGATGGAGAGAGGTTGATTTGTTGTGATATTTGTGAGATTTGGCAACATACTAGGTGTGTTAGAATCCCAAATGATGAGGAAATTCCTCATATTTTTTTGTGTAAGAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCTTTGCCATAG 2043 0.3921 MLNVDVTGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANLERNLGLGMPIWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGWGNHFICNKKYHFLLPSKEALGTCTSCEGCCDAIATMNNSNNNNNNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIALQARKVSLNDISQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANSNNNNNNDITLIFSRYQTLSDQSLVTLGDLFRYMLDLRSRLPRDTSSCIDIMNGNGKEYNTSSLVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQQVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNNVYPSHHEGNNNNNKVKSKYKITRAQLMKDMLYLYKYILIDPKPIMGSEFLSAIPLASRIILDTKHLIKDYFGDVPNFQVELGCEGKFNLYCTILLRNNNLGIDECLTKAMMAPYECITLKSNSTINDLKLEVERSFREIYWGLRSFVVESIGNFGNNSGNEMVFGVIEVGGKVVVEGWVSDMGIMNMIGEICESDPRNGIVECPCGTKEDDGERLICCDICEIWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1468 680 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 680 - -
Aev05g1468 680 CDD PHD_MMD1_like 624 669 - -
Aev05g1468 680 SMART PHD_3 624 670 IPR001965 -
Aev05g1468 680 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 680 - -
Aev05g1468 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 676 IPR013083 -
Aev05g1468 680 SUPERFAMILY FYVE/PHD zinc finger 613 672 IPR011011 -
Aev05g1468 680 Pfam PHD-finger 625 671 IPR019787 -
Aev05g1468 680 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1468 Aev-Chr5 10983312 10993006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1468 10 680 PHD Transcription Factor Family AT5G22260 50.504 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev05g1468 PHD 1.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1468 - - adu:107489498 1135.94