Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1415 ATGGTGCAGCTATACTCTTCATCAGCAGCAACAACACATTCCTCCATCACTTCCATTATCAAGCCACGCCAATTCCCAAACCACTGTTTCACTCCAAATTCCCTTCCTCTGAACCGTAAACCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTTCTCTGTCAAATCCTCACGTGCCGACATCTTCGACCCCAAACCATTCGCTTCACAATCACGACGCCCTCCATCATCAACACCACAACCACCATCATCAGCTGGACCTAGGGTTTATGTGGGTCACTCGATTTACAAAGGGAAGGCTGCACTAACTGTGTCTCCTAGACCACCGGAATTTGCACCATTGGAATCTGGGGCATTCAAAGTATCTAAAGACGGTTATATCCTGCTTCAGTTTGCTCCTTCTGTTGGTGTGCGCCAGTATGATTGGAGCAGGAAGCAGGTTTTCTCACTATCAGTGAGTGAAATGGGATCTTTGATTGGCCTAGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTTAAGGGAAAGAGTGATGAAGGCAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTACGGATGGTTCTGGTCACTTATTTAACCTCAGTGTTCAAAACAGGCTCGAGAACATTGATGAAAATATGTTTATCCCTATTACTAAAGCAGAGCTAGCAGTTTTCACCTCAATTTTCAATTTTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGCTAACTCCATAAAGCCTGAGGATTCCAACCGAGTGAATAATGCTAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAA 813 0.4367 MVQLYSSSAATTHSSITSIIKPRQFPNHCFTPNSLPLNRKPSSSSSSSSSFSVKSSRADIFDPKPFASQSRRPPSSTPQPPSSAGPRVYVGHSIYKGKAALTVSPRPPEFAPLESGAFKVSKDGYILLQFAPSVGVRQYDWSRKQVFSLSVSEMGSLIGLGARESCEFFHDPFKGKSDEGKVRKVLKVEPLTDGSGHLFNLSVQNRLENIDENMFIPITKAELAVFTSIFNFIMPYLLGWNAFANSIKPEDSNRVNNANPRYGGDYEWNR* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1415 270 Gene3D Transcriptional Coactivator Pc4; Chain A 82 259 IPR009044 GO:0003677|GO:0006355
Aev05g1415 270 Pfam Whirly transcription factor 94 228 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aev05g1415 270 MobiDBLite consensus disorder prediction 31 88 - -
Aev05g1415 270 MobiDBLite consensus disorder prediction 31 56 - -
Aev05g1415 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 14 270 - -
Aev05g1415 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 14 270 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aev05g1415 270 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 270 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1415 Aev-Chr5 10353006 10356722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1415 51 270 Whirly Transcription Factor Family AT1G14410 71.364 8.86e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aev05g1415 Whirly 1.2e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1415 - - gmx:100789252 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1415 05 10353006 10356722 Aev03g0458 03 3350992 3353517 PCT