Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1413 ATGTATACTAAGTTGTTCCTTTCCTCATTATGTTTGGTGGTCATCATTTCCAACCTTCCATCATGCTTACAAGCAAGTAAGTATGAGAATGACTCATATTGGGTAGAACATGCCGATGAGTTTGATGATTATTGGAAGCAAAGAGCAAAAGAAGCTGAAAAGTTTAACAAAGAAGCTTATTGCCCTAACCCATATGAACTCACCGGCAACTTCACCACAACCGTTAAAGAGAGCATAGCTGGAAACAAGAGTGTAAGAAGGAACTTGAAAGGCAAAATATTTGGTCCATGCATGGCAACCAACCCCATTGATAGTTGTTGGAGGTGTGACCCCAATTGGCACAAACACCGTGAGAGACTTGCCGATTGTGTTAAAGGCTTTGGAAGAAAAACCACCGGTGGAAAAGGTGGGAAAGTCTACATTGTAACTGACCCCTCAGATGATGAATTGGTGTGGCCTAAAGTTGGTACCCTTCGCCATGCAGTCACAAGAAAAGAGCCTCTTTGGATCATCTTTAGCCGAAGTATGACCATTAGACTCCAACAAGAACTCATAGTGGCTAGTGATAAGACTATTGATGGAAGAGGAGTTGATGTGTACATTGCAAATGGGGCTGGTTTCATGCTCCAATTTGTGAGGAATGTGATCATTCATGGAATCAAGATTTATAATATTAAAGCTGGTCAAGGTGGAACTATTAGGTCTACTGAGACAAATTATGGTACAAGAACTCCAAGTGATGGTGATGGTATCTCAATCTTTGGCTCTAGCAATATTTGGATTGATCATGTTTCCATGAAAAATTGTGCTGATGGCCTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCTAACTGTCATTTCACAGACCACAATGACGTTATGTTGTTTGGAGCTAGTGATGCTCACACCGCAGATGTAATAATGCAAATCACATTGGCATTCAACCACTTTGGAAAGAGATTAATCCAAAGGATGCCAAGAGTGAGATATGGTTTCGTGCATGTGGTAAACAATGACTACACTCACTGGGAAATGTACGCCATTGGTGGAAGCATGCATCCTACCATTATTAGTGAGGGCAATCGTTACATTGCCCCTGACATGATAAATCCCAACATTAATGCTAAAGAGATAACACATAGGTCAGTTCCAGAAGGAACTGATTGGAGTAAGTGGCAGTGGAGATCAATCAATGATGAGAGATTGAATGGCGCATATTTCGTAGAATCTGGAAGTGAGCTCTTGAATAGGCCATTCTCAGTGAAAGATATGATCACAGCTAAGCCTGCATCGTTTGTGGGAAGGCTTACTCGCAATGCTGGCATCCTTAGATGCAGACCTGGAAAGCCTTGCTAG 1365 0.4176 MYTKLFLSSLCLVVIISNLPSCLQASKYENDSYWVEHADEFDDYWKQRAKEAEKFNKEAYCPNPYELTGNFTTTVKESIAGNKSVRRNLKGKIFGPCMATNPIDSCWRCDPNWHKHRERLADCVKGFGRKTTGGKGGKVYIVTDPSDDELVWPKVGTLRHAVTRKEPLWIIFSRSMTIRLQQELIVASDKTIDGRGVDVYIANGAGFMLQFVRNVIIHGIKIYNIKAGQGGTIRSTETNYGTRTPSDGDGISIFGSSNIWIDHVSMKNCADGLIDAIMGSTAITISNCHFTDHNDVMLFGASDAHTADVIMQITLAFNHFGKRLIQRMPRVRYGFVHVVNNDYTHWEMYAIGGSMHPTIISEGNRYIAPDMINPNINAKEITHRSVPEGTDWSKWQWRSINDERLNGAYFVESGSELLNRPFSVKDMITAKPASFVGRLTRNAGILRCRPGKPC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1413 454 SUPERFAMILY Pectin lyase-like 101 445 IPR011050 -
Aev05g1413 454 PANTHER PECTATE LYASE 8 454 - -
Aev05g1413 454 PANTHER PECTATE LYASE 18-RELATED 8 454 IPR045032 GO:0030570
Aev05g1413 454 Pfam Pectate lyase 183 365 IPR002022 -
Aev05g1413 454 Pfam Pectate lyase, N terminus 39 89 IPR007524 GO:0030570
Aev05g1413 454 Gene3D - 100 447 IPR012334 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Aev05g1413 454 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Aev05g1413 454 SMART amb_all 175 372 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1413 Aev-Chr5 10337012 10339736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1413 41 454 Polysaccharide Lyase AT1G14420 58.140 7.94e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1413 K01728 - gmx:100796307 600.512