Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1412 ATGGCCAAAGTATACAAATCGTTCCTTTCAATATGTTTGTTGGTCATTATTCCAACCTTTCATGCAAATATCTTAAAGAATAACACTTCCTTGGAAGAACAAATTCAAAACTCTGAAGCATATTGGAAGGAAAGAGCTTTGATTGCTGAAAAGGATAACAGAGAAGCTTATTACACAGACCCATATGAAGTAACTAGCAACTTCTCCTCTATCGTTCAAGAGACCATAGATGAACACAAGAGTGGAAGAAGGAACTTGGTTGAGAAAAGATCTGGTGGTGGATGTATGGCAACAAACCCAATTGACAAGTGTTGGAGATGTGACCCCAACTGGGAAAAGAACCGCAAGAGACTTGCCGATTGTGTGATAGGCTTTGGCAGAAAAACCACCGGTGGCAAAAATGGGCCAATCTACATTGTCACTGACCCCTCAGATAATGACATGGTCAACCCAAAACAGGGCACTCTTCGCCATGCAGTCACAAGAAATGGGCCTTTATGGATCATTTTCTCTCGCAGCATGTACATTAGGCTCAACCAAGAGCTCATGGTGGCTAGTGACAAGACCATTGATGGAAGAGGAGTTGATGTGTACATTGCCAATGGGGCTAGCTTTGTGATCCAGAATGTCCAGAATGTGATCATTCATGGAATCAAGATCTATAATATTGTGGCTGGGACTGGTGGGCTTATTAGAGACTCTGAGACCCATTATGGGTTTAGGACTAGGAGTGATGGTGATGGAATCTCTATCTTTGGTGGAAGCAATGTTTGGATTGACCATGTTTCTATGAGGAAATGTGCTGATGGCCTCATTGATGCTATTATGGGATCCACTGCTATCACTATTTCTAACTGCCATTTCACCGACCACAATGATGTGATGTTGTTTGGAGCCGATGATGAACACAATATAGATTCAATAATGCAAATCACATTGGCATTCAACCACTTTGGAAAGAGATTAATCCAAAGGATGCCAAGAGTGAGATATGGTTTCGTGCATGTGGTAAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGAAGCATGCATCCTACCATTATTAGTGAGGGCAATCGTTACATTGCCCCTGACATCACAAATCCCAACATAAATGCTAAAGAGATTACAAAGAGGGTGGTTCCAGATGGGTATGACTGGAGATCATGGCAATGGAGATCAATCAATGATGAGAAATTGAATGGCGCATTTTTCGTAGAATCTGGAAGTGACATAAAAAATATTCCATCCTCAATAAAAAATTACATGATCTCAGCTAAGCCTGGTTCTTATGTGGGATTGCTTACTCGCTATGCTGGAATCCTTCGTTGTAGAGTTGGCTCACCTTGTTAG 1362 0.4156 MAKVYKSFLSICLLVIIPTFHANILKNNTSLEEQIQNSEAYWKERALIAEKDNREAYYTDPYEVTSNFSSIVQETIDEHKSGRRNLVEKRSGGGCMATNPIDKCWRCDPNWEKNRKRLADCVIGFGRKTTGGKNGPIYIVTDPSDNDMVNPKQGTLRHAVTRNGPLWIIFSRSMYIRLNQELMVASDKTIDGRGVDVYIANGASFVIQNVQNVIIHGIKIYNIVAGTGGLIRDSETHYGFRTRSDGDGISIFGGSNVWIDHVSMRKCADGLIDAIMGSTAITISNCHFTDHNDVMLFGADDEHNIDSIMQITLAFNHFGKRLIQRMPRVRYGFVHVVNNDYTHWEMYAIGGSMHPTIISEGNRYIAPDITNPNINAKEITKRVVPDGYDWRSWQWRSINDEKLNGAFFVESGSDIKNIPSSIKNYMISAKPGSYVGLLTRYAGILRCRVGSPC* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1412 453 Pfam Pectate lyase, N terminus 37 86 IPR007524 GO:0030570
Aev05g1412 453 PANTHER PECTATE LYASE 8 453 - -
Aev05g1412 453 Pfam Pectate lyase 181 363 IPR002022 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Aev05g1412 453 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Aev05g1412 453 Gene3D - 98 446 IPR012334 -
Aev05g1412 453 SUPERFAMILY Pectin lyase-like 94 447 IPR011050 -
Aev05g1412 453 PANTHER PECTATE LYASE 18-RELATED 8 453 IPR045032 GO:0030570
Aev05g1412 453 SMART amb_all 173 370 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1412 Aev-Chr5 10330273 10334234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1412 8 453 Polysaccharide Lyase AT1G14420 57.918 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1412 K01728 - gmx:100796307 644.81