Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1357 ATGAAGAGGTCTAGGGATGATAATTTAGCTGGTCCTCAAGTGAAACGGCCTATGGTTTCTTCTCGAGGAGAAGGGTCGGGGCAACCACAGATGATGAATGGGAGTGGTTCTACACAGAAGCTAACCACAAATGATGCTCTGGCATACCTCAAGGCTGTCAAGGATATATTTCAAGACAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAGGACTTCAAGGCTCAAAGAATTGATACTTCAGGTGTCATAGCAAGAGTTAAGGAACTGTTCAAAGGCCATAGAGAACTAATATTGGGTTTCAACACCTTTTTACCAAAGGGATATGAAATCACCCTACCTCTGGATGATGATCAACCTCCGCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGACTCGTTTTCAAGGTGATGATCGTGTCTACAAGTCATTTTTGGACATATTAAATATGTACAGAAAGGAAAGCAAGAATATCACCGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGATCATCCCGATCTTCTTAATGAGTTCACTCATTTTCTTCCGGTTACTACTGTAGCCTCTACTCATTATGGTTCTGCTCGAAATTCTTTGCTTCGTGATAGGAGCTCTGCAATGCCAGCAATGCGGCAAATGCATGTTGACAAGAGAGAAAGGACCATGGCTTCACATGGTGATCGTGACCTCAGTGTTGACCGTCCTGACCGCGACCATGACAGAGGTTTGATGAGGGCAGAAAGGGAGCAGAGGCGACGTGTGGAGAAGGATAAGGAACATAGAGAAGAGAGAGATAGGAGAGAACGGGAAAGGGATGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAGCGGTTCTCTCATAAACGAAGATCTGATCGAAGGGCTGAAGACTCTGGTGCTGAACCATTGCTAGATGCAGATGAAAATATTGGTATGCGCCCTATGTCATCCACTTGTGAGGATAGAAATTCTCTGAAAAGCATGTATAGTCAGGAGCTTGCTTTCTGTGAGAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAAGAATTTTTGAAGTGTCTACATATTTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGATCTCATGGAGGGGTTTAATGAATTTTTGGTACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAATGAAGGTCAGAGATCAAAATCTGTGAAGGTTGAAGACAGGGATAGGGACCGAGACCGTTTTAGGGATGATGGGATGAAAGAAAGGGACAAATCTACTGCGACTACCAACAAGGATGTTTCAGGTTCTAAGATGTCCATATATCCCAGCAAGGATAAGTATTGGTCAAAGCCTATTAATGAGCTGGACCTTTCTAACTGTGACCAATGCACTCCAAGTTATCGTCTCCTGCCAAAAAATTACCCAATACCTTTGGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTGTCTGTGACTTCCGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGCGACCACTAAACGAGTTGAGGAGCTGTTAGAAAAGGTCAATAATAATATAATTAGAGGAGACTGCCCACTTCGTATTGAGGAGCACTTTTCAGCACTAAATCTTAGGTGCATTGAACGATTATATGGGGACCATGGACTTGATGTGATGGATGTGTTACGGAAGAATGCATCTCTAGCTTTGCCAGTGATATTGACGCGCATGAAGCAGAAACAAGATGAATGGGCTAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCACCGCAGCTTCTATTTCAAGCAACAAGATACAAAAAGCTTGAGCACTAAAGCCTTACTGGCAGAAATAAAAGAAATTAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCAATTGCAGCTGGAAATAGGCGTCCTATTCTTCCAAACCTGGACTATGAGTATGCTGATCCTGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCTCATGGTGCTGAGGACACGGAAGATGTTGTCAAGGATAAGAATAATTCTGTCAAAAGTGTAGCTGCAAGTGTCGCTGAGTGTGATGGTAGTCCTGGTGCTGGTGCCACTGCAATGAATACAAAGCAAATGAACACTTCTAGAAGTGGGGATGAGTGTATGCCCTTAGATCAATCAAATTCTGGCAAAGTGTGGCAATCAAATGGTGAAAACGGGGCTAAAGATGATAAATGTCTTGATTCAGACCGTACTGTGCGTAAAGCTGAAACTTTGGGCAGTAATACCCAGCATGGTAAGATGAGTACTAGTTCATTCACACCTGAGGAACTATCAGGAGTCAACAAGCAAGACCACTCCAGTGAACGGTTAGTGAATGCCAACATCCAACCTGCAACAGGAGCGGAGCAAAGTAATGGAAGAACAAACATAGATAATGCATCAGGACTCACTGCTGCCTCATCTAGACCTGGTAATGTTTGTGTCGAGGGAGGGCTTGATTTACCTTCATCGGAGGGTGGTGATTCTACAAGACCCGGTACATCCACAAATGGGGCCATCACTGAAGGAATTGAAGTTCACAAGTACCAAGAAGAGTCAGCTCAACACTTCAAAAGTGAACGAGAAGAGGGTGAATTATCTCCAAATGGAGACTTTGAAGAGGATAACTTTGCCGTCTATGGAGAATCTGGTTTGGGTGCAGCTGTTAAAGGAAAAGATGGTGGTGCGAGTCGACAATACCAAACTAGACATGGAGAAGAAGTTTGTGGTGAAACCAGGGGAGAGAATGATGCTGATGCTGACGATGAAGGTGAGGAAAGTCCACACAGGTCATCAGAAGACAGTGAGAATGCTTCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAATCTCGAGAAGAGAATGAAGATGGGGAAAATGATAACAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCCGATGCCCATGATGTAGAAGGAGATGGAACCTCATTGCCATTTTCTGAACGCTTTTTACTGACTGTAAAGCCTCTGGCAAAGCATGTTTCCCAAGCATTGTATGATAAAGAAAGGGCTTCTCGAGTTTTCTATGGAAATGATTCCTTCTACGTGCTCTTTAGACTTCACCAGACATTGTACGAGAGGATTCATTCTGCCAAGATCAACTCATCATCTGCTGATAGGAAATGGAGGGCTTCAAATGATACAAGCTCCACTGATCAGTATGATAGGTTCATGAATGCCCTTTACAATTTGCTAGATGGTTCTTCCGATAATACAAAATTTGAGGATGATTGTCGAGCCATCATTGGAACTCAATCATATGTCTTGTTCACTTTGGACAAACTGATTTATAAGCTTGTTAAACAGCTTCAAGCTGTAGCCACTGATGAGATGGATAACAAGCTTCTCCAACTATATGCATATGAGAAGTCAAGAAAACCTGGAAGATCTGTTGACATAGTTTATCATGAGAATGCCCGTGTTCTTCTTCATGAAGAGAACATATACCGTATTGAATATTCACCTGGAGCAAAGAAGTTGTGTATCCAACTGATGGACTATGGGCATGATAAGCCTGAAGTAACTGCTGTGTCGATGGAGCCTAACTTCGCAGGCTATCTGTACAATGACTTCCTCTCCGTTATCCCCGACAAAAAGGAGAAGTCGGGAATTTACTTGAAGAGGAACAAACGTAAATATGGGTGTGGTGATGAGTTTCCATGCCCAGCTATGGAAGGACTTCAACTTGTTAATGGCCTCGAGTGCAAGATAGCCTGCAGTTCATCCAAGGTATCGTATGTTTTAGATACCGAAGATTATTTGTTTCGGAGAACAAAGAAGATCAAGTCTTCCAACATTTGTTCAACTAGAGTGCAACGGTTCCGCAAAATGTTTACCATTATCTGA 4227 0.4211 MKRSRDDNLAGPQVKRPMVSSRGEGSGQPQMMNGSGSTQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHRELILGFNTFLPKGYEITLPLDDDQPPPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKNITEVYQEVAALFQDHPDLLNEFTHFLPVTTVASTHYGSARNSLLRDRSSAMPAMRQMHVDKRERTMASHGDRDLSVDRPDRDHDRGLMRAEREQRRRVEKDKEHREERDRRERERDDRDYEHDGGRDRERFSHKRRSDRRAEDSGAEPLLDADENIGMRPMSSTCEDRNSLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLVQSEKNDGGFLAGVMNKKSLWNEGQRSKSVKVEDRDRDRDRFRDDGMKERDKSTATTNKDVSGSKMSIYPSKDKYWSKPINELDLSNCDQCTPSYRLLPKNYPIPLASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKVNNNIIRGDCPLRIEEHFSALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRMKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLDYEYADPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLCVPSRPHGAEDTEDVVKDKNNSVKSVAASVAECDGSPGAGATAMNTKQMNTSRSGDECMPLDQSNSGKVWQSNGENGAKDDKCLDSDRTVRKAETLGSNTQHGKMSTSSFTPEELSGVNKQDHSSERLVNANIQPATGAEQSNGRTNIDNASGLTAASSRPGNVCVEGGLDLPSSEGGDSTRPGTSTNGAITEGIEVHKYQEESAQHFKSEREEGELSPNGDFEEDNFAVYGESGLGAAVKGKDGGASRQYQTRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEESREENEDGENDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVSQALYDKERASRVFYGNDSFYVLFRLHQTLYERIHSAKINSSSADRKWRASNDTSSTDQYDRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRSVDIVYHENARVLLHEENIYRIEYSPGAKKLCIQLMDYGHDKPEVTAVSMEPNFAGYLYNDFLSVIPDKKEKSGIYLKRNKRKYGCGDEFPCPAMEGLQLVNGLECKIACSSSKVSYVLDTEDYLFRRTKKIKSSNICSTRVQRFRKMFTII* 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1357 1408 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Aev05g1357 1408 MobiDBLite consensus disorder prediction 841 855 - -
Aev05g1357 1408 ProSiteProfiles PAH domain profile. 337 406 IPR003822 GO:0006355
Aev05g1357 1408 MobiDBLite consensus disorder prediction 1067 1082 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 428 468 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 23 39 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 965 990 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 856 922 - -
Aev05g1357 1408 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Aev05g1357 1408 Coils Coil 559 583 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 795 952 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 804 836 - -
Aev05g1357 1408 Pfam Sin3 family co-repressor 493 583 IPR013194 -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 222 313 - -
Aev05g1357 1408 Coils Coil 254 274 - -
Aev05g1357 1408 Pfam C-terminal domain of Sin3a protein 1135 1381 IPR031693 -
Aev05g1357 1408 PANTHER SIN3B-RELATED 2 1392 IPR039774 GO:0003714
Aev05g1357 1408 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 2 1392 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 430 459 - -
Aev05g1357 1408 Gene3D Paired amphipathic helix 124 195 IPR036600 GO:0006355
Aev05g1357 1408 SMART hdac_interact2seq4b 490 590 IPR013194 -
Aev05g1357 1408 Gene3D Paired amphipathic helix 335 407 IPR036600 GO:0006355
Aev05g1357 1408 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Aev05g1357 1408 MobiDBLite consensus disorder prediction 965 980 - -
Aev05g1357 1408 SUPERFAMILY PAH2 domain 121 193 IPR036600 GO:0006355
Aev05g1357 1408 SUPERFAMILY PAH2 domain 335 403 IPR036600 GO:0006355
Aev05g1357 1408 MobiDBLite consensus disorder prediction 1002 1101 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 205 335 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 1037 1051 - -
Aev05g1357 1408 SUPERFAMILY PAH2 domain 38 108 IPR036600 GO:0006355
Aev05g1357 1408 MobiDBLite consensus disorder prediction 1 39 - -
Aev05g1357 1408 MobiDBLite consensus disorder prediction 1011 1029 - -
Aev05g1357 1408 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Aev05g1357 1408 Pfam Paired amphipathic helix repeat 359 403 IPR003822 GO:0006355
Aev05g1357 1408 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1357 Aev-Chr5 9732131 9740594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1357 28 144 WRKY Transcription Factor Family AT4G12020 49.573 4.89e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aev05g1357 Sin3a_C 1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1357 K11644 - gmx:100811928 2187.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1357 05 9732131 9740594 Aev05g1357 05 9732131 9740594 ECH
Aev05g1357 05 9732131 9740594 Aev03g0149 03 1264648 1265455 PCT