Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1279 ATGCCCAAATCCAAAGCCAAAGCCAAAGCTGTTGTTCCTAAACCCACTCACAGGGATACCTCTCTAAAGCGCAAGAGAGTAGTGCCAGCAAAGATGGCAAAGGTTTTTCAAAGAAAGACTGTGAGATTCAACCTAACCCATTCTCAGAACCAAGCTATCAAGCGTAATCCAAAAAAAAGTGCGTGCGAAGCACAGCTTAGAGTTCAACAACGTGCCAAAGAGGTTCAAGCTAACCTGTCTCCTCAATTCCCAAGCCTTCTTAAGTGCATGCTTCCATCTCATGTAACCGGAGGATTTTGGCTTGGTCTTCCTACAAAATTCTGTCAATTGCATTTGCCTAAGGTTGATACTGTTATTGTTTTGGAAGATGAAAGTGGGGAACTATATGAAACCAAATATCTTGCTGCAAAGGTGGGATTAAGTGGTGGATGGAGGGCCTTTTCCATTGCCCATAACTTACTTGTCATGGATGTTCTCATCTTCCACTTGGTCCGCCCTTCCAAATTTAAGGTGTACATTATAAGATCTCAGGGGTTAGATGAAGTGGATGGTGCTCTTAGCCTTCTCAAGTTAGAGAATGGCAGAAAAGAAAAGAAGGATTATAAAGTTCATCAAGTGGATGATACTCTTGACTACTCTGCTGTTACAGGTGAAGAAGGAAATGATGCAGAGAACAATTGCAAGACTATATTTAGTGATGTTAACATGAACATACCTCAACCTGAAGCTAATGATGGAATCAGATTTGCGGAATCTGAAATCAGTTTCAAAGAAGTAACAGGAATTGAGAATTTCAGCATTCAGGTGAATGGTTTGGTTATAGATTCAGAATTCTCGAAACACATTCGAGGCAAGTATTACAAGCTGTGTTGGAGCCAGAAATCGTTTCTTCATGAGCATCTGATTGAGGATCTGAACTGTAAATTAGTGGCTGGGATAATCTGTGAGACTATCAATATAGCTGATGGGATTAGAGCCAGCAAGTTTGGTAGCGAATCTGAGGAGAGTTTTGTGTTATGGGACAAAACTTTGAATGCCTTTGAGGGTATGGGCATGAAGGTCAGGTTCTTGATTAATCGGCTACACCAGCTCATGAAATTGAACAAGAATCAGAGGCTGGAGGCTCTGTTTCATGACCTCGCTAATGCTCCTTGGTGA 1158 0.4154 MPKSKAKAKAVVPKPTHRDTSLKRKRVVPAKMAKVFQRKTVRFNLTHSQNQAIKRNPKKSACEAQLRVQQRAKEVQANLSPQFPSLLKCMLPSHVTGGFWLGLPTKFCQLHLPKVDTVIVLEDESGELYETKYLAAKVGLSGGWRAFSIAHNLLVMDVLIFHLVRPSKFKVYIIRSQGLDEVDGALSLLKLENGRKEKKDYKVHQVDDTLDYSAVTGEEGNDAENNCKTIFSDVNMNIPQPEANDGIRFAESEISFKEVTGIENFSIQVNGLVIDSEFSKHIRGKYYKLCWSQKSFLHEHLIEDLNCKLVAGIICETINIADGIRASKFGSESEESFVLWDKTLNAFEGMGMKVRFLINRLHQLMKLNKNQRLEALFHDLANAPW* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1279 385 SMART B3_2 86 177 IPR003340 GO:0003677
Aev05g1279 385 SUPERFAMILY DNA-binding pseudobarrel domain 79 176 IPR015300 -
Aev05g1279 385 MobiDBLite consensus disorder prediction 1 21 - -
Aev05g1279 385 Gene3D - 63 178 IPR015300 -
Aev05g1279 385 ProSiteProfiles B3 DNA-binding domain profile. 86 177 IPR003340 GO:0003677
Aev05g1279 385 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 21 353 - -
Aev05g1279 385 CDD B3_DNA 84 175 IPR003340 GO:0003677
Aev05g1279 385 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 353 IPR044837 -
Aev05g1279 385 Pfam B3 DNA binding domain 87 176 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1279 Aev-Chr5 8986169 8990109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1279 71 175 B3 DNA Binding Superfamily AT5G42700 59.048 4.10e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev05g1279 B3 4.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1279 - - ccaj:109816480 372.859