Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1243 ATGGCTGCAAGCTTGAAGAAAACCAGCAAGGGTCGCCAAAAGCTCCCAATGAAGAAGATGGAGAACGAAAGCAATCTTCAGGTGACCTTCTCCAAGCGTCGTAGTGGCCTCTTCAAGAAAGCTAACGAGCTCAGCACCCTCTGTGGTGCCCAGGTGTGCATGATTGTGTTTTCTCCTGCGGGAAAGGCTTACTCATTCGGGAACCCGAACGTGGAGACACTTATCCAGCGCTTCCGGAATGGGTCCCCAACAGCAGCCATCCCCATGGACGCTGCACAACGCATAGCAGATGCTCGACGTGCTACTAGGGTGCGTAAACTCAACGCGGAACTTAGCGAGCTCAATGACAAGCTTCAAGCTGTGAAGAAGCGAGTCAATGAGTTGAACCATCAGCTGCCTCCTCAGCAATGGTGGGCAGGTCCTTTGGAGCATATGAGTGTGCCTCAGATAAAGCACCTCAAGGCTACCTTTGAACAGATGCAGAAGATCGTTACTCGCCTCATCTCTGAGAAAATTGATCTTCAGAGTGCCATTCATGATGTTAATGCACCAACCCCTCATTCTGCTCCAGCTCCAACCCCTCGTGCTAATAGCTCTTCTTCTTCTCATGTTGTTGTTACTGTTGCTGGTGGCAATTACTATGTGCCACAAAGGAATTGGTTTAACCAACATAATACTACTGCTCTGCTGCAGAATGAACGTCGCTTTGATGATAGAAACATTAATGTGGTGAACCCGGTGTATTATGCTGGCTATACTGACATGCTGCTTGGAGGAGGATATGGACCCTATGGTGGTCCAAATGGATTCTATTGA 816 0.4877 MAASLKKTSKGRQKLPMKKMENESNLQVTFSKRRSGLFKKANELSTLCGAQVCMIVFSPAGKAYSFGNPNVETLIQRFRNGSPTAAIPMDAAQRIADARRATRVRKLNAELSELNDKLQAVKKRVNELNHQLPPQQWWAGPLEHMSVPQIKHLKATFEQMQKIVTRLISEKIDLQSAIHDVNAPTPHSAPAPTPRANSSSSSHVVVTVAGGNYYVPQRNWFNQHNTTALLQNERRFDDRNINVVNPVYYAGYTDMLLGGGYGPYGGPNGFY* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1243 271 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Aev05g1243 271 MobiDBLite consensus disorder prediction 1 21 - -
Aev05g1243 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Aev05g1243 271 PANTHER MADS BOX PROTEIN 10 168 - -
Aev05g1243 271 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Aev05g1243 271 Coils Coil 104 131 - -
Aev05g1243 271 CDD MADS_MEF2_like 11 82 IPR033896 GO:0000977|GO:0045944
Aev05g1243 271 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 10 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1243 Aev-Chr5 8739997 8742647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1243 7 165 Type I MADS-box Gene Family AT5G60440 46.626 2.01e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev05g1243 SRF-TF 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1243 - - gmx:100794751 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1243 05 8739997 8742647 Aev09g2436 09 26356665 26357228 PCT