Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1242 ATGGCAAAGAGAAAGTCTAGCTCAGGGCGTCAAAAGATTCCAATTGAGAAAATACCCAAAAAGAGTCATTTACAAGTGACATTCTCAAAGCGTCGTTCTGGTCTTTTCAAGAAAGCTAGTGAACTTTGTACGCTATGTGGAGTAGAGATTGCAATAATTGTTTTCTCTCCAGCTGATAAGGCCTTCTCTTTTGGGCACCCAGAAGTTGAATCTATAATTGATCGATACTTGAGTCAAAACTCTGCACTAGACAGTAGTGCTAGTAGTAGCACCACTCACCAACTTGTTGAGGCTCATCGAAACGCCAATGTTCGGAACCTGAATATGCAATTGACTCAGATTCTGAATCAATTGGAGATTGAGAAGAAACGAGGAGAGGATCTAGACCAGATGAGGAAAGCTAGGCAGAGGCAATTCTGGTGGGAGATTCCAATTGATGAGCTTGGATTCAATGAGTTACAGCATTTAATGTTGTCGTTGGATGAGCTTAAGAAGCATGTTGCAAAATATGCTAGCAAAATGATGATCATGATGGAGCAGAACAACACTAGTACTACTACTATTACTGGGCCAGTTATTATTGGCCCAAATAATAATAATCATAATAATGGATTTGGCTGTTATGATACTACCTATGAAACCAAACCTCATCCTGCAGAGATTATTTATGCTAATAATGTTTCTGGTACGAGCTTTCGAGGAAATACATGGTGA 714 0.395 MAKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYLSQNSALDSSASSSTTHQLVEAHRNANVRNLNMQLTQILNQLEIEKKRGEDLDQMRKARQRQFWWEIPIDELGFNELQHLMLSLDELKKHVAKYASKMMIMMEQNNTSTTTITGPVIIGPNNNNHNNGFGCYDTTYETKPHPAEIIYANNVSGTSFRGNTW* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1242 237 Coils Coil 101 128 - -
Aev05g1242 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 PANTHER MADS BOX PROTEIN 7 189 - -
Aev05g1242 237 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Aev05g1242 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Aev05g1242 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 189 - -
Aev05g1242 237 Gene3D - 90 189 - -
Aev05g1242 237 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Aev05g1242 237 CDD MADS_MEF2_like 9 80 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1242 Aev-Chr5 8734388 8735101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1242 7 208 Type I MADS-box Gene Family AT2G24840 47.196 1.26e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev05g1242 SRF-TF 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1242 - - gmx:100793705 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1242 05 8734388 8735101 Aev05g1242 05 8734388 8735101 ECH