Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1213 ATGGCGGAGCTACAGAACCAGGCAACCACCACCGCCACCACTGAGCAGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAACAGCAATCTCACAACACAAAGGCTCTGATCAGCGCACTCAACCTCCTCTCCCGCAACCTCCCTCTTCCTCCTCACCTCCTCAACACCGTTTCTTCCATCTCTCGCTCCGCCTCATCCGGCGACGCTGGGAGTTCCAGCGAAGAAGGTTTATTGGCAGATCTCAATGATGCGCTGCTTAAGCAACGAACGAACTGTACCTCAGGTTTCAAACTCAACAAAGCTACGGAAAGCCGTTATCGAAGCCTGTTTCAGAATCGCTTGACTCAACTTGAAGAATTGCCTTCAAGTAGGGGAGAGGACCTACAGTCAAATTGCCTGCTTGAGCTTTACGGACTGAAGCTAGCAGAATTGCAGAGCAAGGTTCGGTCTGATGTTAGTTCTGAATACTGGCTCAATGTTATATGTGCGTATCCAAACAGGCAGTTGTTTGATTGGGGCATGATGCGATTGCATCGTCCAATGTATGGTGTCGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGAAAGAAACGGGATGCTGAGAGACTATCGAGATTAGAAGAGCAGGTGAAAAATCATATTGAGACCAGAAAAAGAAGGTTTTTTACAGAAATACTGAATGCTGTACGGGAGTTCCAATTACAAATTCAAGCGTCTTTGAAGCGGAGAAAACAGAGGAATGATGCTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAAAATGGTGAAGGAGAGTAAGAATGAAAGATTGACTCTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTGGGGGCAGCTGTTCAACGCCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAGCTGATTTACCAGAGCCAGATGTGTCGAAGAATGGTATTTCTAAGGAATCGCCTCTTGATGAAGATGTGGATTTGGTAGATTCTGATCAAAATGGCGACTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATTCATTCGATCCAAGAAAAGGTAACTGAGCAACCATCTATTCTTCAAGGGGGAGAATTAAGACCATACCAGCTAGAAGGGCTTCAGTGGATGCTTTCTTTATTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACCATTTCATTGATAGCATATCTTATGGAATACAAGGGTGTGACTGGTCCTTACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAAATTGGGCTCCTAGTATTACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAAGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACTCATTATGATCTTATCATGAGAGATAAAGCAATTCTTAAGAAAATCCATTGGAAATACTTGATTGTGGATGAAGGGCATCGTTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTAGACTCTGGCTACCACATTCAACGTAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAAGAATTATGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCTGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTATCTCTAACAGATGAAGAACAATTATTGGTTATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATTTTGAGAAGGAAAAAGGATGAAGTAGAAAAATACCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACAGATGTAGGCAGAGTTGGCTTAGGCAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGACTATGATATATACAATCATAAGGAGGAGATTGCGAGAGCGTCAGGGAAGTTTGAACTTCTTGATCGCTTGCTTCCTAAACTTCGCAGAACTGGTCACAGAGTCCTTCTTTTCTCACAGATGACTCGTCTAATGGACATTCTTGAGATTTATCTGCGACTCCATGATTATAAGTTTCTTAGACTTGATGGCTCAATAAAAACTGAGGAAAGAGGTTCTCTATTACGAAAATTCAATGCCCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTCGGTCTGAATTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGACCGAGCCCATCGCATTGGACAGAAAAAGGAAGTTAGGGTGTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGGGGTACAAGCTCACTTGGGACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCAGCTCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGGAGACAAAGGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTGCCAGATTGGGTATACGCTCCAATAAATAAGGATGACAAGGTCAAAGCTTTTGATTTTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTTGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTATGGAGAATGGACAGGACATATCTAAGCTTTCGGCTAAAGGGAAGAGAAGAGACCGCCTCCATTCCGACAACCACGCTCAAGCCGGCGATAAGATGGCGACAGAAGAATGGTTATTAGAGCTAGGGAATGAAAGTGTTCACATGGAGAATTTGAGATCAAGCGAAGATGATTTCATCGTGACCCCTGCTTCTAAGAAACTGAAGCCTGAAGAACCAAGTTCCCAGAAACATGGAAGTGACGATGTCAGAGCAAGTGGTTCGGAGGAGCATTTGTTTTCATGGAATACACACGGAAAGAAGAGATCGAGCTATAATATCTAG 3252 0.4299 MAELQNQATTTATTEQPPPPQQQQQQQQSHNTKALISALNLLSRNLPLPPHLLNTVSSISRSASSGDAGSSSEEGLLADLNDALLKQRTNCTSGFKLNKATESRYRSLFQNRLTQLEELPSSRGEDLQSNCLLELYGLKLAELQSKVRSDVSSEYWLNVICAYPNRQLFDWGMMRLHRPMYGVGDPFAMDADDQLRKKRDAERLSRLEEQVKNHIETRKRRFFTEILNAVREFQLQIQASLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMKMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSEADLPEPDVSKNGISKESPLDEDVDLVDSDQNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKGVTGPYLIVAPKAVLPNWINEFSNWAPSITAILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAILKKIHWKYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLVIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLGNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYNHKEEIARASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSIKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQRENYRSRLMEEHELPDWVYAPINKDDKVKAFDFGSVTGKRKRKEVVYADTLSDLQWMKAMENGQDISKLSAKGKRRDRLHSDNHAQAGDKMATEEWLLELGNESVHMENLRSSEDDFIVTPASKKLKPEEPSSQKHGSDDVRASGSEEHLFSWNTHGKKRSSYNI* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1213 1083 Pfam Helicase conserved C-terminal domain 708 821 IPR001650 -
Aev05g1213 1083 Gene3D - 366 621 IPR038718 -
Aev05g1213 1083 Gene3D - 628 927 IPR027417 -
Aev05g1213 1083 SMART ultradead3 393 586 IPR014001 -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 1029 1064 - -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 986 1007 - -
Aev05g1213 1083 CDD SF2_C_SNF 706 832 - -
Aev05g1213 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 575 IPR014001 -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 985 1008 - -
Aev05g1213 1083 SMART helicmild6 737 821 IPR001650 -
Aev05g1213 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 1029 1083 - -
Aev05g1213 1083 Pfam Snf2-ATP coupling, chromatin remodelling complex 914 975 IPR029295 GO:0042393
Aev05g1213 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 875 IPR027417 -
Aev05g1213 1083 Coils Coil 912 932 - -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 314 369 - -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 1 32 - -
Aev05g1213 1083 MobiDBLite consensus disorder prediction 1066 1083 - -
Aev05g1213 1083 Coils Coil 197 217 - -
Aev05g1213 1083 PANTHER ATP-DEPENDENT HELICASE BRM 19 1032 - -
Aev05g1213 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 711 878 IPR001650 -
Aev05g1213 1083 PANTHER SNF2/RAD54 HELICASE FAMILY 19 1032 - -
Aev05g1213 1083 SMART SnAC_2 914 975 IPR029295 GO:0042393
Aev05g1213 1083 Pfam SNF2-related domain 400 688 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1213 Aev-Chr5 8482810 8488500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1213 379 848 RAD5 or RAD16-like Gene Family AT1G02670 25.673 4.55e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev05g1213 SNF2_N 5.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1213 - - gmx:100775993 1772.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1213 05 8482810 8488500 Aev05g1213 05 8482810 8488500 ECH