Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1116 ATGGCAGCTCTGCGAAAAATTTTCGGCACAATACTCCCTCACTCTAGACCCCATGCTTCTTCTCTTTCCCAACCTCTCTTTCTCCGAACAAGGACTGCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGCAATTAGCTGAAGCCTTTTCACAATATGGCAGTGTCCTGAAAGCTGATATAGTAATGAATAGAGCCAAGAATAGATCCAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCTCAAGGCACAAATAGGCATGAATCGAAAGGCAAGAATCTACTAA 306 0.4183 MAALRKIFGTILPHSRPHASSLSQPLFLRTRTAKIFVKGLAFSTTEEQLAEAFSQYGSVLKADIVMNRAKNRSKGFGYVTFAKEEEALKAQIGMNRKARIY* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1116 101 SUPERFAMILY RNA-binding domain, RBD 29 97 IPR035979 GO:0003676
Aev05g1116 101 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 101 IPR000504 GO:0003723
Aev05g1116 101 Gene3D - 14 99 IPR012677 -
Aev05g1116 101 PANTHER TRANSFORMER-2-RELATED 20 97 - -
Aev05g1116 101 PANTHER RNA RECOGNITION MOTIF 20 97 - -
Aev05g1116 101 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 97 IPR000504 GO:0003723
Aev05g1116 101 SMART rrm1_1 34 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1116 Aev-Chr5 7810093 7811332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1116 27 97 Eukaryotic Initiation Factors Gene Family AT1G22760 38.028 1.79e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1116 - K13195 gmx:100527061 133.265