Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1066 ATGCAGGGTAACGGCGCCGACGGTGAAGCCTTGGATTTCGAGCCTGAGGACGACGACCTCATGGACGAGGACGCCGCCGCCGACGCCGACGCCTCTCCCCGCGCCGCTCCTCCTCCTAAGCTCAAGTCCGCTATCACCTCCGGCGCCTCCTCCTCCCTCTCCGCCCCTAAGAAGACCAAGGGCCGCGGCTTCCGCCAGGACACCGATCCCAACCGCAACGCTCGTCTCCAAGCCTCTGACTTTGACTCCCTCGCCACTGAGGGCGGCCCTGGCCCTCAACGATCCATTGAAGGGTGGATTATTCTGGTGACGGGCGTGCACGAGGAAGCGCAGGAGGATGATTTGCAAAACGCGTTTGGTGAATACGGAGAGATTAAGAATCTGCATTTGAATCTCGACCGTCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGCGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGGTCTGATCTGCTTACACAAACCATTTATGTTGACTGGGCTTTCAGCAGTGGTCCTATTAATGAGTCTGTCAGAAGGAAGAATGCTAGCCCCAAACCCATTGAGGGGTCCGATCCGGCAGCCACATCCATCGCACCACTAAGATCGACTGCGTCGCCGGCCGCCGGCTCTCTCTCTCTCTTCCTCGCATTCCTTCGGAGCTCAGACTGTCTCTCTTCCTCGCACACACTCGGCGCTCGCACTCCCTCTCGAGTCTCGGCGTCGCACTCCCTTTCCCTGCCTCTCCGGCTCGCCTCCCTGCCTCGCGGTCCTCACTGCAGCTGCTTCTGCCTCTGCCTTTCCGTCCTCGCTGCTTCTGCCACGGTGCCGCCTCTGCTGCTGCTTCTTCCACCTCGGCCTCGTTCTGCTTCCTCCGGCTGCTGCTGCTTCTTCCACCTCGGCTGCGTGCTTCTTCCTCCGGCTGCTGCTGGTTCTTCCGTTCTTCAAGACCAACTCGTGAGCGGCGCTCAAGGAGCCCTAGGAGAAGATACTGAAATGGTAAGTGGTTACCACCAGATAACTCTCCCCACCACCACCGTCTCTCTTCTTTTCCCTCTTTCTTCTGATAACCCCTTCAAGATTTCATTTTTATCAATGGCTTCTTCTTATGAAGCCACGAATGTGGTTCTGTCTAAAATTAAGAGCCTTGAGCCTGAAAATGCCTCCAAAATCATGGGTTACCTTCTCATGAACCTTGAAGACTCTGAATTGCTGCGCTTGGCTTGTAGCCCTGACCCTGTTCTTCACAATATCGTTCTAAGGGTTAAGACCCATTTGGGTTTGTCTCTCTCTTCTTCTTCACCTTCTTCGCCTTCTCCTCTTAACCCCATAACAAGACCCTCTAGTAGTACTGCTACCTCTAACAATAACCACAACCCATTTTCAAAATCTTCTCCTAGAGTGGCTACTAATGGCTTTGACTTCACTAGGAACACTTCTTCACCTTCTTCTCCTTGGTCACTTCCTGGGTTCCCTAACAACCCCATTAGCCCAAAGTCAAGTCCTTTACTCTCTTATGATAATATCAGAGCTGGTTCTGTTCATGCTTCTTCATTTTCACCGCGGGTCAATGGTGATTGTAACACTGTTAGTGGTTTTGTTGATGAGCAACAAATGGATGAGTATTTTCCCTTCTTAGGAGAGTCATCTAAGAACGAGGAATTGCTGGATCCACGCTTAGAATTAGGTCTTGGGGCTCACAATTTGCACTCACTCAACAATGGGGATGCTCCTTTCCACAGAAGGAGCTTCTCTGCTAGTGATGCTTGTTTTGGGTTTGAGGAAGGAGGACCTGGAATTGGGTATAAGCCATGCCTTTACTTTGCAAGAGGGTTTTGCAAAAATGGAACTAATTGTAAGTTTGTGCATGGTGCTTTGAATGATTCACTTGGAGCCATTGTTGGTTCTCCTAGTAGGTTTGAGGGGTTGGAACAGCATGAGGAGTTGATGAGGTTGAAAGCTGCACAGCATCAAAGACTAATGGCTGCATCACAGCTTGTGGGTGGAGGTTCACCATCCTCATATGACAAGTACATTGATTTTTTGATGATGCAGCAGAATGATCCCCAGAGAGCGGCTGCTGCCGCAGCATTTATGATGGGAGAAGAATTTCACAACTTTGGCCGGGGCAGGCTGGAAAGAAATGACTTTCTACCCATGATTTCCGCAGAAAAGCCAAATTCTGCGTCGCGACAGATTTACTTAACGTTTCCTGCTGAAAGCACATTTAAAGATGAGGATGTTTCAGAGTATTTCAGCAAATTTGGGCCGGTGCAAGATGTGAGGATTCCATACCAGCAAAAGCGGATGTTTGGATTTGTTACATTTGTCTATCCAGAGACAGTGAGACTCATACTATCCAAAGGGAACCCTCATTTTATCTGTGATTCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCAGACAAGAGACAGCAACAGCAGCAACAGCAATTAGAGAGGGGTGATTTTTCACCATGTTTAAGTCCTTCTGGGTTCGACTCTAAAGAGCCTTTTGATTTTCATCCTGGAGCAAGAATGTTATATAATCCACATGATATCTTATTGAGGAGAAAACTTGAGGAGCAGGCTGAGTTGCAGCAAGTCCTTGAACTTCAGGAAAGAAGGCTGAAGAATCTACAGCTTCCTGACTTCAAGAATATTCCGATCCACCATCATCAGCGCAGTCTCTCTGTCGGTGCTCCTTTGCCCTTAAACCATCAACTTCAAAGTCAAGTTAGCAACGCAGGTCTTTCTTCTGATAACATCAAAGGAGATCTTACAGGCTACCGTAGCAGCCTCAGTTCTAACCTTTCTTTAGGCACTGATGCTGAACAGCAGCCACAGCCACAGAAAGAAGTTGGTTCGGCTGTCATTGCTGATACTGAGAGCAGTAATGAAAAGGATGGTCCAAATGCAGAAGTTGTAAATCTTAGTAATAATAGGAGCGTGGAGCCGACCCTTCCTGATAGTTTCTTTGCTTCGCCGACAAAAGCAGCCGGAGATAATCTGTCTGACTTCTCTACATTGGCAGATGTCAATGAGAGTGCTAGCTCATCTTCTTCTCATAACAAGTTAGAACAACAGCCAGCCACTTCTGGTGAAATGGCTTCGCTTTAA 3150 0.4883 MQGNGADGEALDFEPEDDDLMDEDAAADADASPRAAPPPKLKSAITSGASSSLSAPKKTKGRGFRQDTDPNRNARLQASDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSDLLTQTIYVDWAFSSGPINESVRRKNASPKPIEGSDPAATSIAPLRSTASPAAGSLSLFLAFLRSSDCLSSSHTLGARTPSRVSASHSLSLPLRLASLPRGPHCSCFCLCLSVLAASATVPPLLLLLPPRPRSASSGCCCFFHLGCVLLPPAAAGSSVLQDQLVSGAQGALGEDTEMVSGYHQITLPTTTVSLLFPLSSDNPFKISFLSMASSYEATNVVLSKIKSLEPENASKIMGYLLMNLEDSELLRLACSPDPVLHNIVLRVKTHLGLSLSSSSPSSPSPLNPITRPSSSTATSNNNHNPFSKSSPRVATNGFDFTRNTSSPSSPWSLPGFPNNPISPKSSPLLSYDNIRAGSVHASSFSPRVNGDCNTVSGFVDEQQMDEYFPFLGESSKNEELLDPRLELGLGAHNLHSLNNGDAPFHRRSFSASDACFGFEEGGPGIGYKPCLYFARGFCKNGTNCKFVHGALNDSLGAIVGSPSRFEGLEQHEELMRLKAAQHQRLMAASQLVGGGSPSSYDKYIDFLMMQQNDPQRAAAAAAFMMGEEFHNFGRGRLERNDFLPMISAEKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQQQQQQQLERGDFSPCLSPSGFDSKEPFDFHPGARMLYNPHDILLRRKLEEQAELQQVLELQERRLKNLQLPDFKNIPIHHHQRSLSVGAPLPLNHQLQSQVSNAGLSSDNIKGDLTGYRSSLSSNLSLGTDAEQQPQPQKEVGSAVIADTESSNEKDGPNAEVVNLSNNRSVEPTLPDSFFASPTKAAGDNLSDFSTLADVNESASSSSSHNKLEQQPATSGEMASL* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1066 1049 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 376 1046 - -
Aev05g1066 1049 Gene3D - 731 835 IPR012677 -
Aev05g1066 1049 SUPERFAMILY RNA-binding domain, RBD 750 832 IPR035979 GO:0003676
Aev05g1066 1049 MobiDBLite consensus disorder prediction 437 494 - -
Aev05g1066 1049 MobiDBLite consensus disorder prediction 948 1000 - -
Aev05g1066 1049 MobiDBLite consensus disorder prediction 437 499 - -
Aev05g1066 1049 CDD RRM_RBM8 93 180 IPR033744 GO:0003729
Aev05g1066 1049 MobiDBLite consensus disorder prediction 948 1049 - -
Aev05g1066 1049 MobiDBLite consensus disorder prediction 1 92 - -
Aev05g1066 1049 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 608 631 IPR000571 GO:0046872
Aev05g1066 1049 MobiDBLite consensus disorder prediction 184 203 - -
Aev05g1066 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 738 814 IPR000504 GO:0003723
Aev05g1066 1049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Aev05g1066 1049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 751 797 IPR000504 GO:0003723
Aev05g1066 1049 MobiDBLite consensus disorder prediction 813 837 - -
Aev05g1066 1049 SUPERFAMILY RNA-binding domain, RBD 92 187 IPR035979 GO:0003676
Aev05g1066 1049 SUPERFAMILY CCCH zinc finger 609 631 IPR036855 GO:0046872
Aev05g1066 1049 Coils Coil 866 886 - -
Aev05g1066 1049 Gene3D - 42 188 IPR012677 -
Aev05g1066 1049 SMART rrm1_1 739 809 IPR000504 GO:0003723
Aev05g1066 1049 SMART rrm1_1 100 173 IPR000504 GO:0003723
Aev05g1066 1049 MobiDBLite consensus disorder prediction 1011 1049 - -
Aev05g1066 1049 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55 376 1046 - -
Aev05g1066 1049 MobiDBLite consensus disorder prediction 10 26 - -
Aev05g1066 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Aev05g1066 1049 SMART c3hfinal6 608 632 IPR000571 GO:0046872
Aev05g1066 1049 CDD RRM_AtC3H46_like 740 809 IPR034365 -
Aev05g1066 1049 PRINTS RNA binding motif protein 8 family signature 164 176 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aev05g1066 1049 PRINTS RNA binding motif protein 8 family signature 90 104 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aev05g1066 1049 PRINTS RNA binding motif protein 8 family signature 146 162 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aev05g1066 1049 PRINTS RNA binding motif protein 8 family signature 53 65 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aev05g1066 1049 ProSiteProfiles Zinc finger C3H1-type profile. 611 633 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1066 Aev-Chr5 7488073 7498638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g1066 101 175 Eukaryotic Initiation Factors Gene Family AT4G34110 37.333 9.39e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1066 - - gmx:100778061 853.203