Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0873 ATGGAGAGTAGGCACAAATGCAAGCTCTGCTCAAGAACATTCGCCAATGGCAGAGCACTTGGTGGCCACATGAAGGCTCACTTAGCCACACTCCCTCTCCCTCCCAAGCCCCAACAACCTCAACCTCCTTCTCTCTCTGACACTACTGCTTCATTCTCTTCATCGTCATATTCCTCTTCAGAATCAGAAGAGGAGGAGGAGGAAGCACTACTTGTTGCTGCAGCGGAACAGAGAGAAACAGAGGAAAAGTCTCTGATAGCTAATTATGGGCTAAGAGAGAACCCCAAGAAAAGCTTCAGGGTTGCAGATCCTGAGTTCTCTTTCCCTGCAACTGACACTGGTGGCTCTGTTGTGGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGGAGACGATCCAAACGCACCCGAAAGTCCATCCTCACCAGCCATGTCCACAACAACAATAATAACAATAATGATAAGAAGCAGCATAAGCTGAGTTTCATGGAGTCGCCAGAGCCGGCAGAACCGGTTAGCTCTGTCTCCAACACTTCACCAGAGGAAGACGTTGCTATGTGCCTCATGATGCTCTCTAGGGACAGATGGACCAGAAAGAGCGTTCTTGTCAAAGAAGAAGAAGAAGAGATCAAATTGATGAAGAAGAGGGTTCGAGGGAAGCACCAGTGTGAGAATTGTGGGAAAACGTTTCGGTCTTCAGGGGCATTGGGTAGCCACAAGAGCATATGTTTCTCTGGTGAAGCAGAGGCTAATGATAAAGTGTTCGAATGCCCTTTTTGTTCCAAGGTGTTTGGGTCAGGTCAAGCACTCGGTGGCCACAAGAGATCTCACCTAATTCCATCTTCAACCTCTAATGCTCCTAACCATTCAAATTCTGCTAGATTGAATCTCAAAGAGAACTTGTTCATAGATCTCAACTTGCCTGCTCCACCAGAAGAAGACGACCTCAGTGTTGTCTCTGATGCCTGA 978 0.4785 MESRHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQQPQPPSLSDTTASFSSSSYSSSESEEEEEEALLVAAAEQRETEEKSLIANYGLRENPKKSFRVADPEFSFPATDTGGSVVVQDRESETESKNPTRRRSKRTRKSILTSHVHNNNNNNNDKKQHKLSFMESPEPAEPVSSVSNTSPEEDVAMCLMMLSRDRWTRKSVLVKEEEEEIKLMKKRVRGKHQCENCGKTFRSSGALGSHKSICFSGEAEANDKVFECPFCSKVFGSGQALGGHKRSHLIPSSTSNAPNHSNSARLNLKENLFIDLNLPAPPEEDDLSVVSDA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0873 325 MobiDBLite consensus disorder prediction 25 160 - -
Aev05g0873 325 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Aev05g0873 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 280 IPR013087 -
Aev05g0873 325 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Aev05g0873 325 MobiDBLite consensus disorder prediction 43 59 - -
Aev05g0873 325 Pfam C2H2-type zinc finger 257 281 - -
Aev05g0873 325 Pfam C2H2-type zinc finger 4 29 - -
Aev05g0873 325 SUPERFAMILY beta-beta-alpha zinc fingers 224 280 IPR036236 -
Aev05g0873 325 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Aev05g0873 325 Gene3D Classic Zinc Finger 221 280 - -
Aev05g0873 325 Pfam Zinc finger, C2H2 type 224 243 IPR013087 -
Aev05g0873 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Aev05g0873 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Aev05g0873 325 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 325 IPR044303 GO:0006355
Aev05g0873 325 SMART c2h2final6 5 27 IPR013087 -
Aev05g0873 325 SMART c2h2final6 258 280 IPR013087 -
Aev05g0873 325 SMART c2h2final6 224 244 IPR013087 -
Aev05g0873 325 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 325 - -
Aev05g0873 325 MobiDBLite consensus disorder prediction 71 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0873 Aev-Chr5 6120449 6121426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0873 1 322 C2H2 Transcription Factor Family AT3G60580 33.708 1.35e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev05g0873 zf-C2H2_6 1.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0873 - - aip:107643045 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0873 05 6120449 6121426 Aev01g0347 01 2927958 2928824 PCT