Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0668 ATGGACGACATGGCTGCTTACTACTCACAGCCTCAACCCCTCACTTATCAGTACTACCAGCACCCTCCGCCGCCACAGCTCGTGGCGGTGGTGCCACCGCCACCGGGCGCGGCTCTCCCGCCGGCGCATCACCACCTGCACCCTCCGTACGTGCCTCACCACCACCAGCAACCAACGTTCACCTCCTACGGCTCTCCGATTCCTCCGCAATCTCCGGGCAACGAGGTTCGCACTCTCTTCATCGCTGGCCTTCCCGAAGACGTTAAGCCCCGCGAAATCTACAATCTCTTCCGCGAATTCCACGGTTACGAGTCCTCGCATCTTCGAAGTCCCAACAATTCCTCTCAGCCTTTTGCTTTTGCTGTGTTCGCGAATCAGCAGTCCGCAATCATGGCAATGCATGCTCTCAATGGGATGGTCTTCGATCTTGAAAAGGGGTCAACTCTTTATATTGATCTGGCAAAATCCAACTCCAGAGCTAAGCGCACGAGGATAGATGATGAGAGAGCTGGCTCAGATAAGAAAGCTAGAGGATCATGGGCCTCTACGGATTCTGGTGTTGGCAACATTCACATGCCTGGAATGGGTAATTCTGCTTTCAACATGAACACGATTGGTTATTCATCTGCACAAAGTCATGGGAAGGCTGATGGGAACACTCTGAACGGTAGTCTATATGAAAATCTGAAGAAGTGTTCAACTCCTTACGTTCCACAAAATTCGACTCCATGCGCAACATTATTTGTGGCTAATTTAGGGCCATCTTGTAATGAACAAGAGCTAGTGCAAGTGTTTTCCAGATGCCCTGGGTTTTTGAAACTGAAGATGCAGAGCACATATGGGACTCCAGTTGCTTTTGTTGATTTCCAGGATGTTGCTGGCTCAACTGAGGCTCTAAACAATCTGCAAGGCACCATTCTTCATTCCTCACCAGCTGGTGAAGGAATGCGTTTAGAATTTGCTAAGTCGCGGATGGGTATGCGGAAGAAGCGAAAATAA 999 0.5015 MDDMAAYYSQPQPLTYQYYQHPPPPQLVAVVPPPPGAALPPAHHHLHPPYVPHHHQQPTFTSYGSPIPPQSPGNEVRTLFIAGLPEDVKPREIYNLFREFHGYESSHLRSPNNSSQPFAFAVFANQQSAIMAMHALNGMVFDLEKGSTLYIDLAKSNSRAKRTRIDDERAGSDKKARGSWASTDSGVGNIHMPGMGNSAFNMNTIGYSSAQSHGKADGNTLNGSLYENLKKCSTPYVPQNSTPCATLFVANLGPSCNEQELVQVFSRCPGFLKLKMQSTYGTPVAFVDFQDVAGSTEALNNLQGTILHSSPAGEGMRLEFAKSRMGMRKKRK* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0668 332 SMART rrm1_1 78 152 IPR000504 GO:0003723
Aev05g0668 332 SMART rrm1_1 246 319 IPR000504 GO:0003723
Aev05g0668 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 309 IPR000504 GO:0003723
Aev05g0668 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 142 IPR000504 GO:0003723
Aev05g0668 332 CDD RRM_scw1_like 243 322 - -
Aev05g0668 332 Gene3D - 73 166 IPR012677 -
Aev05g0668 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Aev05g0668 332 PANTHER RNA-BINDING PROTEIN-RELATED 1 318 - -
Aev05g0668 332 MobiDBLite consensus disorder prediction 160 187 - -
Aev05g0668 332 MobiDBLite consensus disorder prediction 160 175 - -
Aev05g0668 332 Gene3D - 237 332 IPR012677 -
Aev05g0668 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 156 IPR000504 GO:0003723
Aev05g0668 332 CDD RRM_RBPMS_like 77 152 - -
Aev05g0668 332 SUPERFAMILY RNA-binding domain, RBD 76 309 IPR035979 GO:0003676
Aev05g0668 332 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0668 Aev-Chr5 4653588 4657287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0668 47 311 Eukaryotic Initiation Factors Gene Family AT4G34110 23.355 5.87e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0668 - - gmx:100780983 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0668 05 4653588 4657287 Aev05g0668 05 4653588 4657287 ECH