Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0656 ATGAATCGCCAAGTTAGAGGAGGAGGAAGAAGGGGTGGACTGAACGGGGAAGGTGGCGGAAGAGGAAACGAAGGAAACAACAGAGTGAGAGTACAAGTGAGGCAGCATGAGGAGCTATCTGCAAGTTTGGGCGCTGGGTTCCCACAGATAGTTCTACCTACACACTTTCCTCAAATGACTACTTTTGGAGATCAGAGTGATAATAACAATATTGTGCCTATTGCTATTGCCAGTGGAGGAGGTCAGGATGAGATGATGATTGTTCCCACCACGGGTGCACCTACTACTACTTTTGCTGGTATTACCACCGCAGCGGAATTTGAGATTGGTGAGAGTTCCAATGCTAATGCTAATGCTGGTGTTGGTGTTGCTGTAGCTGCTTGCACCTGTGTCACTTGTCCATTGCATGCCATTCTACCAGCAGGGCACCAACATCAGATTCACCCTCCTGCATCTCATGCTCATGCTCATGCAGGTGGTGGTGGGAACATGTGGTGGAGTGCTCAAGTGCAAGGAGGTTTACAAAACGAAAGGAGAGGTGGCATTATGCAAGTGACCGACACGCTCTACTCCTCCTCTTCCCTATTAAACGGAAGCAGGGACAACATCATGATGATGGTAAGGCCAGCACGCTCCTCTGGCCGTATTTCTTCTACTACTACTACTTTTTCTGATGTCAACTATCTTGAAGCCTTTCCACCACCGCTACCGCTACCACTGCAACGTGTGAGTGATAGATGGTATCTTGCTTTCCCCGTAGTTCCCCGCCCTGGTGTTCAACTATCCCATGCTGCTCGTGCGTGGATTGAGAGGCTGATTAGACATCAAGAGTGTTTGGTGCGCGCCTTTCCTCCTCCTCATGCTAGTGGGGCCAATCTGCTGCCGGATCCCACTCAACCTTTTTTCACTTTCCAACCGGATCCTCCTCTTCCTCTTCAACCCCTTTATGATTTCCCTCGTTTCATTTCTGATGTCAACACCCTCACCCTAGAGATTCGCACTGCCTTACGACAGTTGCTTAACGAAGGCTTCGCTCCAATCGCGGACCTTCTGATCATAGATTATTCCGTTGTGCTGAGTTTGCTTGATTTTTGTGCCGAACTAATGCAAGAACCACAGCTTCCACAAGCAGTGATTAATAATGAGCAGCTTCTTCTCATCAACATGGACGAAGATGAAGATATGGAAGATGCTAATGAGTCAGGGTTGAGTCAAAGGGAGATCGCCACCTTCCTTCCAAGGGAAATCTTTAGTTCCAATGGTCAGGGCGCTCATAATACTGATCTCTGCAGCATTTGCCAGGAGGACTATGTGCATGGAGAAGAGCTTGGGAGGCTAGATTGCAAGCACGTATATCACTATGCCTGTATCAAGCAATGGCTGGCTATTAAGAACTTATGCCCTATCTGCAAACGAACTGCACTGTCATCTGTTTTTGATGACGATGACGATGAAGATAATGAAGATGGTGGCAGTTGA 1479 0.4801 MNRQVRGGGRRGGLNGEGGGRGNEGNNRVRVQVRQHEELSASLGAGFPQIVLPTHFPQMTTFGDQSDNNNIVPIAIASGGGQDEMMIVPTTGAPTTTFAGITTAAEFEIGESSNANANAGVGVAVAACTCVTCPLHAILPAGHQHQIHPPASHAHAHAGGGGNMWWSAQVQGGLQNERRGGIMQVTDTLYSSSSLLNGSRDNIMMMVRPARSSGRISSTTTTFSDVNYLEAFPPPLPLPLQRVSDRWYLAFPVVPRPGVQLSHAARAWIERLIRHQECLVRAFPPPHASGANLLPDPTQPFFTFQPDPPLPLQPLYDFPRFISDVNTLTLEIRTALRQLLNEGFAPIADLLIIDYSVVLSLLDFCAELMQEPQLPQAVINNEQLLLINMDEDEDMEDANESGLSQREIATFLPREIFSSNGQGAHNTDLCSICQEDYVHGEELGRLDCKHVYHYACIKQWLAIKNLCPICKRTALSSVFDDDDDEDNEDGGS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0656 492 SUPERFAMILY RING/U-box 429 475 - -
Aev05g0656 492 ProSiteProfiles Zinc finger RING-type profile. 430 471 IPR001841 -
Aev05g0656 492 Pfam Ring finger domain 429 471 IPR001841 -
Aev05g0656 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 475 IPR013083 -
Aev05g0656 492 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 321 475 IPR045191 GO:0061630
Aev05g0656 492 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 321 475 - -
Aev05g0656 492 MobiDBLite consensus disorder prediction 1 27 - -
Aev05g0656 492 SMART ring_2 430 470 IPR001841 -
Aev05g0656 492 CDD RING-H2_TTC3 429 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0656 Aev-Chr5 4555314 4559198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0656 326 477 C3H Transcription Factor Family AT2G15530 32.692 3.23e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0656 - - adu:110280903 155.992