Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0646 ATGTTGGCAAGGCCGAAATGGGTATTGGCTGAGATTGGCAGAGGCAAGAGAAGGGTACGGAGCGGGACGAGCGAGAGAGGTAGAGAGAGAGAGATAGGGAGAGCGAGCGAGCGAGATCTCCGAATTAGGGTTTCCTTTTTCCCCCCACACCAAGGTGCAAGGGATTTTCCGCCGTGCAGCCTTCGATTCTTGTTGTTGGTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATACCTTGGGATGTCGACACTGAGGGCCTGAGGGAATACATGAGCAAATATGGTGAACTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGTCGATCTCGTGGATTTGGATATGTCACATTTGCTTCAGTGGATGATGCTAAGGATGTATTATCAAGTGAACATATTCTTGGCAACAGGATGCTGGAAGTTAAAGTGGCCACCCCAAAGGAAGAGATGAGGGCACCAGTCAAAAAAGTTACCAGAATATTTGTTGCAAGGATTCCACAATCAGTAACCGAAGCATCCTTTAGAAGTCATTTTGAGAAATACGGTGAAATAACAGATTTATACATGCCAAAGGATCAAGGCTCAAAAATGCACCGTGGAATCGGTTTTATCACCTTTGCGAGTGCAGATTCTGTGGAGAATTTGATGGCAGAAACTCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGTGCTACACCCAAGGATGATGACTTTAAGCCAATTAGCAGAATGTCACAGGGACACGGACAAGGGCACGGACAAGGACAGGGACAGGGAGGATATGGTGCATACAATGCTTATATTTCTGCTGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCACCCTGGCCCAATTTATGGAAGGGGAGAACCTTCTCGAGGAATTGGTAAAAAGATTTTTGTTGGCCGACTCCCTCCAGAGGCAACTTCTGAGGATCTTCGACAGTATTTTGGAAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAGGGATCCTAAGAGAGCAGGTCATAGAGGTTTCGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTGTCGCGAAGGTCTCATGAGATTTGTGGTCATCAGGTAGCAATAGATTCGGCCACACCCGTTGATGATGCTGGGCCAAGTGGGCCAAGTGTACCTAGTGGGCCAAGTGGGAGTTTTATGATGAATAGTATGAGTTCTTTCGGGGGATATGGCGGTCCTATGCGAACTTATGGGAGGATGTATGGCAGCCTAGACTTTGATGATTGGGGTTATGGAATGCCTGGTGGGAGACCATCAAGAGCAGATTGGAGGTACAGACCATACTAG 1344 0.471 MLARPKWVLAEIGRGKRRVRSGTSERGREREIGRASERDLRIRVSFFPPHQGARDFPPCSLRFLLLVMEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSSEHILGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEASFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMAETHELGGSTVVVDRATPKDDDFKPISRMSQGHGQGHGQGQGQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGPSVPSGPSGSFMMNSMSSFGGYGGPMRTYGRMYGSLDFDDWGYGMPGGRPSRADWRYRPY* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0646 447 Gene3D - 68 150 IPR012677 -
Aev05g0646 447 Gene3D - 302 383 IPR012677 -
Aev05g0646 447 SUPERFAMILY RNA-binding domain, RBD 156 264 IPR035979 GO:0003676
Aev05g0646 447 SUPERFAMILY RNA-binding domain, RBD 69 152 IPR035979 GO:0003676
Aev05g0646 447 Gene3D - 151 271 IPR012677 -
Aev05g0646 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 147 IPR000504 GO:0003723
Aev05g0646 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Aev05g0646 447 SUPERFAMILY RNA-binding domain, RBD 303 411 IPR035979 GO:0003676
Aev05g0646 447 SMART rrm1_1 160 231 IPR000504 GO:0003723
Aev05g0646 447 SMART rrm1_1 72 143 IPR000504 GO:0003723
Aev05g0646 447 SMART rrm1_1 304 375 IPR000504 GO:0003723
Aev05g0646 447 PANTHER OS01G0945800 PROTEIN 70 447 - -
Aev05g0646 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 219 IPR000504 GO:0003723
Aev05g0646 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 359 IPR000504 GO:0003723
Aev05g0646 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 131 IPR000504 GO:0003723
Aev05g0646 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 235 IPR000504 GO:0003723
Aev05g0646 447 MobiDBLite consensus disorder prediction 375 396 - -
Aev05g0646 447 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 70 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0646 Aev-Chr5 4481565 4485879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0646 72 372 Eukaryotic Initiation Factors Gene Family AT2G23350 25.243 7.18e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0646 K14411 - gmx:100795240 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0646 05 4481565 4485879 Aev05g0646 05 4481565 4485879 ECH