Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0556 ATGGGCTCTTATGGTGTTGGCAACATTGTCCATTGGCACTTCGCTTTAGCCATTATGATTGCAACCACTCTTTTAACACCAAACCTTAGTTCTGCGAAAGAATCGAAGATAATTGGGACGAGAATGAATGCGATTGATCAATGCTGGAGATGGAATCCCGACTGGAGGAGGCATCGATCACAACTTGCCAACTGCTCCGTGGGCTATGCTGGCAAGATGACTAACAACTTTGGCAATGACCTCATTCACTATAAAGTTACGGATCCCTCCGATGACCCCATAAATCCCAAGCCCGGCACCTTGAGGTATGGAGCTTCTGTGATTCAAGGAAAAGTCTGGATCAAATTCCAGAGGGACATGCACATTACACTTTTGAAACCCATTCTTATTAGTAGTTTCACCACCATTGATGGCCGTGGTGTCAACATCCACATTGCTAATAATGCTTGCTTCATGATCTTTAAGGCTACCAACATCATCATCCATAGCATCCGGATTCATCATTGCAAAGCTCAAGCTCCTGGTTTGGTGATGGGTCCTAATGGAAAGGTGATTCCTTTGGGTCAAGTGGATGGAGATGCAATCAGACTTGTTACAGCTTCCAAGATTTGGATTGATCACAATACGTTTCACGACTGTGAAGATGGTCTTCTTGATGTCACGCGTGGTTCCACTGATGTGACGATCTCCAACAACTGGTTCAGAAACCAAAATAAAGTCATGCTTCTTGGGCATGATGATGGCTATGTGAGAGACCAAAACATGAAAGTTACTGTTGTGTACAACCATTTTGGACCTAATTGCAACCAGCGCATGCCAAGGATCCGCCATGGATATGCACATGTAGCCAACAATCTTTACCAGGGATGGGTGCAATATGCTATCGGTGGAAGCATGGAGCCTAGCCTCAAAAGCGAATCTAATCTCTTCATAGCACCAACATCGGGGAGCAAGGAGGTGACATGGAGAAAAGGTAGTAATGGAAATGAGAATAATTGGGAATTTCACTCAGTAAGAGACGTTTTTGAAAACGGAGCCTTCTTCAAAGCAACACAAGGTGGACGTGTGCCGAAGCCAAATTATAACATGGAACAGAGTTTTAAAGTTGCTTATGCTAAATCAGTCAGAGTATTGACAAGTTCATCGGGTGCATTAAAATGCACCAAAACCTCTATATGTTGA 1182 0.4374 MGSYGVGNIVHWHFALAIMIATTLLTPNLSSAKESKIIGTRMNAIDQCWRWNPDWRRHRSQLANCSVGYAGKMTNNFGNDLIHYKVTDPSDDPINPKPGTLRYGASVIQGKVWIKFQRDMHITLLKPILISSFTTIDGRGVNIHIANNACFMIFKATNIIIHSIRIHHCKAQAPGLVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTFHDCEDGLLDVTRGSTDVTISNNWFRNQNKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSESNLFIAPTSGSKEVTWRKGSNGNENNWEFHSVRDVFENGAFFKATQGGRVPKPNYNMEQSFKVAYAKSVRVLTSSSGALKCTKTSIC* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Aev05g0556 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Aev05g0556 393 PANTHER PECTATE LYASE 18 390 - -
Aev05g0556 393 SMART amb_all 119 316 IPR002022 -
Aev05g0556 393 SUPERFAMILY Pectin lyase-like 26 387 IPR011050 -
Aev05g0556 393 Gene3D - 42 386 IPR012334 -
Aev05g0556 393 Pfam Pectate lyase 128 310 IPR002022 -
Aev05g0556 393 PANTHER PECTATE LYASE 18-RELATED 18 390 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0556 Aev-Chr5 3857704 3859483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0556 73 325 Polysaccharide Lyase AT5G09280 70.751 4.82e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0556 K01728 - gmx:100811216 649.047