Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0552 ATGGCGAGTGGTTTTGGGGCATCAACGAGAGCGTCTCAACCGAGCCCATCGTGCTCGGGGAACAACGGTTCAAACGATGCTGGTGATTTCGAATGCAACATATGTTTCGATTTAGCTCAGGATCCAGTGATAACACTGTGCGGCCACCTTTTCTGTTGGCCATGTTTATATAGGTGGCTTCACCATCACTCCCATTCACAAGAGTGCCCTGTTTGCAAGGCACTCATTCAGGAAGAGAAATTGGTTCCCCTTTATGGGAGGGGCAAGACACAGACTGATCCTAGGAATAAGTCTTATCCTGGCATGGAGATTCCTCACCGGCCTTCCGGGCAGCGGCCACAGACTGCGCCACCCCCTCCACCTCAGGGTCCTGAGGCCAACCCCTTTGGGAATTATGGGTTTGGATTGATGGGGGGATTCATTCCCATGGCTACTGCCAGGATTGGGAACTTCACGCTTTCCACTGCTTTTGGTGGTTTGTTACCATCTCTGCTCAACATTCAGTTCCATGGTTTCCAAGATGCCACTGTTTATGGGACAACTTCTGGTTATCCCTTTGGGTTTAACACGTTTCAGGGAGGGGATAATGCACGGGGTTTTTCACAGGCCAACACTGGTCAGGTGCAGCGTCAGGAGGACAATGTTTTGAAGAATCTGCTTTTGTTGATTGGTTTTCTTATCCTTCTTACAGTTATTTTTGTGTGGTGA 708 0.4944 MASGFGASTRASQPSPSCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQEEKLVPLYGRGKTQTDPRNKSYPGMEIPHRPSGQRPQTAPPPPPQGPEANPFGNYGFGLMGGFIPMATARIGNFTLSTAFGGLLPSLLNIQFHGFQDATVYGTTSGYPFGFNTFQGGDNARGFSQANTGQVQRQEDNVLKNLLLLIGFLILLTVIFVW* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0552 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aev05g0552 235 MobiDBLite consensus disorder prediction 86 128 - -
Aev05g0552 235 SMART ring_2 32 72 IPR001841 -
Aev05g0552 235 CDD RING-HC_AtRMA_like 30 74 - -
Aev05g0552 235 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Aev05g0552 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Aev05g0552 235 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 233 - -
Aev05g0552 235 MobiDBLite consensus disorder prediction 1 22 - -
Aev05g0552 235 MobiDBLite consensus disorder prediction 111 126 - -
Aev05g0552 235 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Aev05g0552 235 Pfam Zinc finger, C3HC4 type (RING finger) 31 72 - -
Aev05g0552 235 SUPERFAMILY RING/U-box 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0552 Aev-Chr5 3827960 3828667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0552 21 233 C3H Transcription Factor Family AT2G23780 62.673 1.23e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0552 K10666 - gmx:100814783 396.356