Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0542 ATGAATCATCGTCCTACACCTATCGAAGATCATATGATGTTCATCTCTCAACTATATCCTGCCAGTGCATACACTCAAATAATTCCTCAACATGGGACGGAGAATAAGAAGGCGAGGAGGCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGGAGATCCGGGGAACAAGAAGAGGAAACTGAGCGCAGAGCAAGTGAATCTTCTAGAACTAAACTTCGGGAATGAGCACAAGCTGGAGTCGGAAAGGAAGGACAAGCTAGCACTAGAGCTGGGTCTGGATCCTCGCCAAGTTGCTGTGTGGTTTCAGAACAGAAGGGCTCGCTGGAAGAACAAGAAGTTGGAGCAAGAGTACTCCACCCTTAAAAAAGCACATGAAACCACCTTGCTCGAGAAATGCCGCCTTGAAACTGAGGTGTTGAAGCTGAAGGAGCAAGTTTCAGAGTCAGAGAAGGAGATTCAACGGCTATTAGAGAGAGTCCCTAGCAATAGTGCAAGTTCATCACAGTCTTACTCACAGTCACAATCAATGGAGTTGGAAGCTGTGGACCCACCATTCCTTGGAGAGTTTGGAGTAGTGGATAATAACGGCTATGATGATGATGTGTTTTACCTCCCTGATCAGACCCATTACATCAATGGCATGGAGTGGATTAATTTGTACATGTGA 669 0.4574 MNHRPTPIEDHMMFISQLYPASAYTQIIPQHGTENKKARRRRNKKNKGGENGDPGNKKRKLSAEQVNLLELNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEQEYSTLKKAHETTLLEKCRLETEVLKLKEQVSESEKEIQRLLERVPSNSASSSQSYSQSQSMELEAVDPPFLGEFGVVDNNGYDDDVFYLPDQTHYINGMEWINLYM* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0542 222 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Aev05g0542 222 SMART HOX_1 55 116 IPR001356 GO:0003677
Aev05g0542 222 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Aev05g0542 222 Coils Coil 139 159 - -
Aev05g0542 222 CDD homeodomain 57 113 IPR001356 GO:0003677
Aev05g0542 222 MobiDBLite consensus disorder prediction 26 60 - -
Aev05g0542 222 Gene3D - 49 122 - -
Aev05g0542 222 SUPERFAMILY Homeodomain-like 55 121 IPR009057 -
Aev05g0542 222 Coils Coil 104 131 - -
Aev05g0542 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 221 IPR045224 GO:0003700
Aev05g0542 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 9 221 - -
Aev05g0542 222 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Aev05g0542 222 MobiDBLite consensus disorder prediction 46 60 - -
Aev05g0542 222 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Aev05g0542 222 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0542 Aev-Chr5 3735982 3738535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0542 1 222 Homeobox Transcription Factor Family AT4G36740 52.889 3.90e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aev05g0542 Homeodomain 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0542 K09338 - gmx:100810736 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0542 05 3735982 3738535 Aev05g0542 05 3735982 3738535 ECH