Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0524 ATGGGAGACTTCAACAGCAGCAACAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGTACCAAAGCTCAGAACCGCGCCAACGTCCTTCAGCTCAAGCTGATTGGGCAGAGTCATCCAACTGGTCTCACTGCCAACCTTCTGAAGCTGTTTGAGCCTAGGCCTCCCTTGGAGTATAAGCCGCCTCCAGAGAAGAGAAAATGCCCCCCTTTAATAGGGATGGCACAATTTGTGGGCAAGTTTGCTGAGCCTGGGGATCCGGAATATGCTCCACCAATCAAGGAAGTTGAAACTCCTGCACAACGAAGAGCAAGAATACACAAGCTAAGGCTTGAGGCAGGAGCAGCAAAGGCTGCTGAGGAGCTAGAGAAATACGATCCACATAATGACCCGAATGTATCTGGAGATCCATACAAGACATTGTTTGTGGCCAAACTAAGTTACGAGACCTCTGAGAGCAGACTCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTGAGATTAGTTGCTGACAAAGAAACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTACCTGCATACAAGGGACATGAAAGCTGCTTATAAACAAGCCGATGGTAGGAAAATTGATGGTCGAAGGGTGCTTGTGGATGTTGAGCGCGGGAGGACTGTTCCAAATTGGCGACCTCGCCGCCTTGGTGGTGGACTTGGTACTACTAGAGTTGGGGGTGAAGAAGTGGTTGAGCGACAATCTGGGAGGGAGCAACAGCAGTCTCGATCTGAAGAACCAAGAGCACGGGAGGATCGACATGCTGATCGGGACAGAGAAGTATCACGTGAAAGAGGTAGGGATAGAGATAGAGAGCGCTCACGTGAGCATTCACATGAAAGGGTCAGGGACCGTGACCATAGAGAGGATAGGCACCATAGAGACCGCGATAGGACAAGGGACAGAGATAGGGACAGAGACAGGGAAAGGGATAGGGACAGAGATAGGGAAAGAGACCGTGGACGTGACCGAGATAGAGGTCGTGATCGTGACCGTGAGCGAGAGAGAGACCGAGATCGCCATCGTGAAAGAGATAGAGATTATGAAGTTGGGGATACTGATCGGGGACGGTCACGCGATAGGGAGCCTGATTATGATCGTGTTGAATCTAAACATGAGAGGGACCGACATGGTGAAAGGGAGCATGACTATGACCCTGAGGATGATCGTGGTTGGTACCAATCTGAGCATGGACATAGGCATGCAGATCCTGATCAGGAACCAGAAAAGTATGACCACTATGAGCACCATCGTGGACGGGGGCAATATGATCCTGCGGATGACCATGGTGACCATTACAATCAATATCCTGATCACGACACTGTGGAAGATGACTACCACATGGGACGTGCAACATCTGAATCACGTGAGAAGGAGAGAAGTCGTGATATGGACCATGAATATCGTCGTTCAGAGAGATCTCACTCCAGGGAGTATGATTACTAG 1503 0.499 MGDFNSSNNNNNNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLIGMAQFVGKFAEPGDPEYAPPIKEVETPAQRRARIHKLRLEAGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETSESRLKREFESYGPIKRVRLVADKETNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVVERQSGREQQQSRSEEPRAREDRHADRDREVSRERGRDRDRERSREHSHERVRDRDHREDRHHRDRDRTRDRDRDRDRERDRDRDRERDRGRDRDRGRDRDRERERDRDRHRERDRDYEVGDTDRGRSRDREPDYDRVESKHERDRHGEREHDYDPEDDRGWYQSEHGHRHADPDQEPEKYDHYEHHRGRGQYDPADDHGDHYNQYPDHDTVEDDYHMGRATSESREKERSRDMDHEYRRSERSHSREYDY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0524 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
Aev05g0524 500 PANTHER - 13 364 - -
Aev05g0524 500 CDD RRM_snRNP70 145 235 IPR034143 GO:0030619
Aev05g0524 500 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 13 364 - -
Aev05g0524 500 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 49 137 IPR022023 -
Aev05g0524 500 MobiDBLite consensus disorder prediction 249 500 - -
Aev05g0524 500 MobiDBLite consensus disorder prediction 228 500 - -
Aev05g0524 500 Gene3D - 133 259 IPR012677 -
Aev05g0524 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 217 IPR000504 GO:0003723
Aev05g0524 500 SMART rrm1_1 147 220 IPR000504 GO:0003723
Aev05g0524 500 SUPERFAMILY RNA-binding domain, RBD 134 246 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0524 Aev-Chr5 3635551 3639879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0524 148 194 C2H2 Transcription Factor Family AT2G19380 38.298 1.86e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0524 K11093 - gmx:100800903 419.468