Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0456 ATGGGTCGTGGGAAGATAGAGATAAAGCTGATTGAGAACCCAACAAACAGGCAGGTGACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTGCTCTGTGATGCTAAGGTCTCTCTCATCATGTTCTCCAAGAACAACAAGATGCACGAATACATTAGCCCTGGCCTCACGACTAAAAAAGTTATTGATCAGTATCAGAAGACTTTGGGGAATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAACACTTGAAGAAACTGAAAGATATTAATAATAAACTCAGGAGACAGATCAGGAATAGGATAGGTGAGAGTTTGGATATGGACGATCTGAGCTTTCAGCAACTTCGGAGTCTTGAAGAGGATATGGTTTCTTCCATTGGCAAAATACGCGAAAGGAAGTTTCATGTGATCAAAACCCGGACTGATACAAGTAGGAAAAAGGTTAGAAGCTTGGAACAGATGAACGGGAATCTCCTCCTTGAGCTGGAAAAGTGTGTGATCCATCCACAATTTATTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGGGCCTCCAACCTCTATGCATTCTGTCAGCACCATACTCATTTGAATCATCTTCATCTCAATCATCATCATGGACATCATGCTCACGCACTGCAGGGAGGAGCAGCAGCAGCAGAGCCCTATAAAACTGATGATGATTTGCGCCTTGCCTAG 741 0.4332 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGNIDLWHSHYEKMLEHLKKLKDINNKLRRQIRNRIGESLDMDDLSFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTSRKKVRSLEQMNGNLLLELEKCVIHPQFILHDEGDEESAVALANGASNLYAFCQHHTHLNHLHLNHHHGHHAHALQGGAAAAEPYKTDDDLRLA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0456 246 Coils Coil 85 105 - -
Aev05g0456 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 225 - -
Aev05g0456 246 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Aev05g0456 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Aev05g0456 246 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev05g0456 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Aev05g0456 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Aev05g0456 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev05g0456 246 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0456 Aev-Chr5 3190213 3191983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0456 1 233 MADS-box Gene Family AT3G54340 47.863 1.17e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev05g0456 K-box 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0456 K09264 - gmx:100784496 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0456 05 3190213 3191983 Aev05g0456 05 3190213 3191983 ECH
Aev05g0456 05 3190213 3191983 Aev08g0229 08 1293482 1295792 ECH