Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0454 ATGCTTTACCAAACTCCCCATCCTCTCCTCTTTCAATTTCATCCCTTCTCCTCTTCTTCTTCTTCTTCCTCCACTCTCCTTCGCCTTTCAACCACATCACCATCTCTTCCCCTCTCTTCTTATCATACTATCCTCCCTCAGCGTGAAACGGAAATGGAGTGCGTAGAGGCAGCGTTGAAGACGAGTTTTAGGAAAGACATGGGCATGAAATTTAGCCCACAGACTTTCATTGAGGAGCTGTCCGCTTTTAATAATGTTCAAAATGGCGCACCCTGCGACGACCTCTTCGTTGACGAGCTCCTTGACTTCTCGCACGTGGAACAAGAGCAAGAAGAACAAGAAGAAGAACAGCAACACAAGGATGGAGACTCTGCTTGTGTCTCCCCCAAACAACTAAGCCACCCCGCCACCACCACTCACGACTATGCTTCTGTCCCCACTAGCGAGCTCAGCGTTCCGGATGATGTGGCGGACTTGGAGTGGCTATCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCCCCCATTCCCACCGTGACAACCTCCGACAAAAACAACCACCCGAAAGAGCCCGCGACCCAAAAGCCTGACCCGTTAAGCCCTGTTCTCACTCAGCCCTGTTTCAAAACCCCTGTTCCAGCCAAGGCTAGAAGCAAGCGGACCCGAACCGGTGTTCGGGTCTGGCCACTCGGGTCACCCTCCTTCACGGACTCGTCCTCAAGCTCCACCACAACCACAACCTCATCCTCTTCATCTTCTTCCCCTTCGAGCCCCTTGCTAATTTACACAAACTTTACCCAAAACATGGAACAGGTTTGCTCTGAGGCACCGGCCAAGAAGCTGAAGAAAAAGCCCTCTCCCGACGGCGGTGCGGCCGTGGCACCGCGGCGGTGCAGCCATTGCGGCGTCCAGAAGACCCCACAGTGGCGAACGGGTCCCCTCGGTGCGAAGACACTCTGCAACGCGTGTGGGGTTCGGTTCAAGTCGGGTCGTCTCTTACCCGAATATCGACCCGCCTGTAGCCCCACTTTCTCGAGCGAGTTGCACTCAAACCATCACCGGAAGGTTCTGGAGATGCGGCGGAAGAAGGAGACAACCATGGATGGTGGGGTTGAGATTACCCCTCTGGCCCCTCCTCCGGTTGCTCCAAGTTTTTGA 1161 0.5435 MLYQTPHPLLFQFHPFSSSSSSSSTLLRLSTTSPSLPLSSYHTILPQRETEMECVEAALKTSFRKDMGMKFSPQTFIEELSAFNNVQNGAPCDDLFVDELLDFSHVEQEQEEQEEEQQHKDGDSACVSPKQLSHPATTTHDYASVPTSELSVPDDVADLEWLSHFVEDSFSEFSAPIPTVTTSDKNNHPKEPATQKPDPLSPVLTQPCFKTPVPAKARSKRTRTGVRVWPLGSPSFTDSSSSSTTTTTSSSSSSSPSSPLLIYTNFTQNMEQVCSEAPAKKLKKKPSPDGGAAVAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTMDGGVEITPLAPPPVAPSF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0454 386 SMART GATA_3 293 347 IPR000679 GO:0006355|GO:0043565
Aev05g0454 386 MobiDBLite consensus disorder prediction 106 123 - -
Aev05g0454 386 MobiDBLite consensus disorder prediction 106 148 - -
Aev05g0454 386 PANTHER GATA TRANSCRIPTION FACTOR 52 368 - -
Aev05g0454 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 355 - -
Aev05g0454 386 CDD ZnF_GATA 298 346 IPR000679 GO:0006355|GO:0043565
Aev05g0454 386 ProSitePatterns GATA-type zinc finger domain. 299 324 IPR000679 GO:0006355|GO:0043565
Aev05g0454 386 MobiDBLite consensus disorder prediction 233 260 - -
Aev05g0454 386 MobiDBLite consensus disorder prediction 130 146 - -
Aev05g0454 386 MobiDBLite consensus disorder prediction 176 260 - -
Aev05g0454 386 MobiDBLite consensus disorder prediction 277 296 - -
Aev05g0454 386 Pfam GATA zinc finger 299 333 IPR000679 GO:0006355|GO:0043565
Aev05g0454 386 Gene3D - 292 367 IPR013088 GO:0006355|GO:0008270
Aev05g0454 386 ProSiteProfiles GATA-type zinc finger domain profile. 293 329 IPR000679 GO:0006355|GO:0043565
Aev05g0454 386 PANTHER GATA TRANSCRIPTION FACTOR 52 368 - -
Aev05g0454 386 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0454 Aev-Chr5 3172931 3174350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0454 56 386 C2C2-Gata Transcription Factor Family AT5G66320 48.023 2.19e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aev05g0454 GATA 5.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0454 - - var:108335072 404.06