Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0418 ATGGCGGAGGAGAGGCTCAGCGGCGTCGTCCAGTGGTTCAACAGCTCCAAGGGCTTCGGCTTCATCAAGCCCGACCACGGCGGCGAAGACCTCTTCGTCCACCACTCCTCCATCCAGTCTGACGGATTCCGCACTCTTCTTGAGGGCGATCGCGTCGAGTTCACCGTCGCCAACAACGGCGACAAGACCAAGGCACTCGACGTCACTGGCCCCAACGGCGTCCCTCTCCGCTCCAACAACGATGGTTATGGCTCCCGCGGCGGAAATGATAGACGCAACGGAGGTGGTGGTGGAGGAGGGTGCTATCAGTGCGGCGATTTCGGCCACATTGCCAGGGATTGCAACCGGAGTGGTAATTCCGGTGGCGGAAGTGATGGCGCTTGCTACAATTGCGGCGGATTTGGACACATGGCTAGGGATTGCAACATGAACGGCAATTCTGGCGGTGGTGGCGGCCGTGGTTGCTACAATTGCGGTGGATTCGGACACATGGCTAGGGATTGCGTTAGCGGTGGCCGCGGAGGTGGTAACAGTGGTGGTTGCTACCAGTGTGGGGAGGTAGGTCACATGGCGAGGGACTGCACCAGAGAAGGTGGCAATGGTGGTGGTGGTTTCAATGGTGGAAAGAACACGTGCTACAACTGCGGGAAGCCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGGTGA 693 0.5945 MAEERLSGVVQWFNSSKGFGFIKPDHGGEDLFVHHSSIQSDGFRTLLEGDRVEFTVANNGDKTKALDVTGPNGVPLRSNNDGYGSRGGNDRRNGGGGGGGCYQCGDFGHIARDCNRSGNSGGGSDGACYNCGGFGHMARDCNMNGNSGGGGGRGCYNCGGFGHMARDCVSGGRGGGNSGGCYQCGEVGHMARDCTREGGNGGGGFNGGKNTCYNCGKPGHFARECVEASG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0418 230 SUPERFAMILY Retrovirus zinc finger-like domains 145 197 IPR036875 GO:0003676|GO:0008270
Aev05g0418 230 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 146 228 - -
Aev05g0418 230 ProSiteProfiles Zinc finger CCHC-type profile. 128 141 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 170 - -
Aev05g0418 230 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 170 - -
Aev05g0418 230 PANTHER COLD SHOCK DOMAIN PROTEIN 2 146 228 - -
Aev05g0418 230 SUPERFAMILY Retrovirus zinc finger-like domains 198 226 IPR036875 GO:0003676|GO:0008270
Aev05g0418 230 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 SMART c2hcfinal6 211 227 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 ProSiteProfiles Cold-shock (CSD) domain profile. 5 70 IPR002059 GO:0003676
Aev05g0418 230 CDD CSP_CDS 8 70 IPR002059 GO:0003676
Aev05g0418 230 Gene3D - 81 121 - -
Aev05g0418 230 Gene3D - 153 204 - -
Aev05g0418 230 ProSiteProfiles Zinc finger CCHC-type profile. 181 196 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 Pfam Zinc knuckle 127 142 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 Pfam Zinc knuckle 100 114 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 Pfam Zinc knuckle 210 225 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 Pfam Zinc knuckle 153 168 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Aev05g0418 230 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676
Aev05g0418 230 ProSiteProfiles Zinc finger CCHC-type profile. 101 114 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 ProSiteProfiles Zinc finger CCHC-type profile. 155 168 IPR001878 GO:0003676|GO:0008270
Aev05g0418 230 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Aev05g0418 230 Gene3D - 1 80 IPR012340 -
Aev05g0418 230 MobiDBLite consensus disorder prediction 62 90 - -
Aev05g0418 230 Gene3D - 205 230 - -
Aev05g0418 230 Gene3D - 122 152 - -
Aev05g0418 230 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Aev05g0418 230 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Aev05g0418 230 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Aev05g0418 230 SMART csp_8 7 71 IPR011129 GO:0003676
Aev05g0418 230 SUPERFAMILY Retrovirus zinc finger-like domains 92 144 IPR036875 GO:0003676|GO:0008270
Aev05g0418 230 ProSiteProfiles Zinc finger CCHC-type profile. 212 225 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0418 Aev-Chr5 2878934 2879626 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aev05g0418 CSD 6.9e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0418 K09250 - gmx:106796585 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0418 05 2878934 2879626 Aev05g0418 05 2878934 2879626 ECH