Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0378 ATGTTTAACTGGAATTCAAGGTCCCCTTCCCCTTGGAGAGCTCAATCAAGGTCAAGATCACGGTCAAGGTCTAGGCCTAGGTCTAGGTCAAGATCAATTCCAAGGCAAAGGCAAAGATCCCGTTCTAGAAGTCGTGGCAGGTCAAGATCAAGAAGCCATGAAAGGGATGAGACTCAAAATTCTGGGAATACACTTTATGTGACAGGCCTATCTTCAAGGGTCACTGAAAGAGATTTGGAGGAGCATTTCTCAAAGGAAGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCTCGAACCCGTATATCTCGTGGTTTTGCTTTTATTACAATGGATACTGTCGAGGATGCAAACCGATGTATCAAGCATCTCAATCAATCGGTTTTAGAGGGTCGCTATATCACTGTTGAGAGGTCACGAAGAAAGCGGCCAAGAACTCCTACTCCTGGACACTATCTTGGGCTGAAGAGTACCAGAGACTATGGTTATCGTGGTGGTGGTGGTGGTGGAGGTGGTGGTGACCGTGACCGTGACCGTGGAAGGTATCGTGGTGGTTCTGGACGTGATGATTATCCACCACATCGAAGGTCTCCAAGGCGTTCACCATATCGAGGTGGCAGGGATTACTCACCGAGGCGCTCACCACCACCCTATGGTGGAAGATCAAGGAGGGAAAGGTCCAGGTCACTCCCTTATTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGATGA 744 0.4866 MFNWNSRSPSPWRAQSRSRSRSRSRPRSRSRSIPRQRQRSRSRSRGRSRSRSHERDETQNSGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKHLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGYRGGGGGGGGGDRDRDRGRYRGGSGRDDYPPHRRSPRRSPYRGGRDYSPRRSPPPYGGRSRRERSRSLPYSPYGSPDRRYARGSR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0378 247 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 243 - -
Aev05g0378 247 PANTHER RNA RECOGNITION MOTIF 3 243 - -
Aev05g0378 247 MobiDBLite consensus disorder prediction 1 69 - -
Aev05g0378 247 SUPERFAMILY RNA-binding domain, RBD 57 173 IPR035979 GO:0003676
Aev05g0378 247 SMART rrm1_1 64 137 IPR000504 GO:0003723
Aev05g0378 247 MobiDBLite consensus disorder prediction 135 247 - -
Aev05g0378 247 MobiDBLite consensus disorder prediction 18 48 - -
Aev05g0378 247 MobiDBLite consensus disorder prediction 171 207 - -
Aev05g0378 247 Gene3D - 7 148 IPR012677 -
Aev05g0378 247 MobiDBLite consensus disorder prediction 1 17 - -
Aev05g0378 247 CDD RRM_RBMX_like 62 141 - -
Aev05g0378 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Aev05g0378 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0378 Aev-Chr5 2656176 2658342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0378 65 148 Eukaryotic Initiation Factors Gene Family AT1G49760 29.762 2.75e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0378 K12897 - gmx:100527350 236.884