Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0354 ATGATGCTTCGTCCAATAATGGCGAAAACTCCACCACAGGAAGAGGAAGAGGAAGAGGAAGAAGATGATTACGAAAACGAAGAAGAAGAAGAGGAGAAAGTAGAGGAGAGAAGAAAACAGAAGATAAGGATAAGAGTAGTGGCGTCGTCATCAACAAGAAGAAGGGGCAGTGCATCGTCCTCTAGCAGCAGTTTGTCGTGCTGCTGTCAGGCGGATGAATGCGGGGCGGACTTGGGAATGGCGGCCAAGTACAACCGGCGACACAAGGTCTGCGATCGCCATGCTAAGGCCCCTGTCGTCTTACTTTCCGGCACCCGTCAGAGGTTTTGCCAACAGTGTAGCAAGTTCCACGAGCTAGCAATGTTTGATGACACCAAAAGGAGCTGCAGGGAAAGATTAGCCACTCATAATCAGCGTCGACGAAAAGCTCATCATGCAGCACCAGCACCAGCAGCAGGGAGACCAACTGATGGCTGA 477 0.5094 MMLRPIMAKTPPQEEEEEEEEDDYENEEEEEEKVEERRKQKIRIRVVASSSTRRRGSASSSSSSLSCCCQADECGADLGMAAKYNRRHKVCDRHAKAPVVLLSGTRQRFCQQCSKFHELAMFDDTKRSCRERLATHNQRRRKAHHAAPAPAAGRPTDG* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0354 158 MobiDBLite consensus disorder prediction 1 67 - -
Aev05g0354 158 MobiDBLite consensus disorder prediction 13 31 - -
Aev05g0354 158 PANTHER - 15 146 - -
Aev05g0354 158 SUPERFAMILY SBT domain 67 145 IPR036893 GO:0003677|GO:0005634
Aev05g0354 158 MobiDBLite consensus disorder prediction 135 158 - -
Aev05g0354 158 Coils Coil 14 44 - -
Aev05g0354 158 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 146 IPR044817 GO:0003677
Aev05g0354 158 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Aev05g0354 158 Pfam SBP domain 69 142 IPR004333 GO:0003677
Aev05g0354 158 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Aev05g0354 158 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0354 Aev-Chr5 2531205 2531849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0354 53 143 SBP-box Gene Family AT2G33810 57.143 3.89e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aev05g0354 SBP 3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0354 - - vra:106776693 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0354 05 2531205 2531849 Aev05g0354 05 2531205 2531849 ECH