Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0347 ATGAAGAACAATCAACTACTTGTTAGGGGTGATTCTATTGCCTGGGGAGGTAGTCATGACGGAGACTTCAATGTTAAATCCTCTTACCTTGCCTCAACAGGAACTGGTCTGTCGTCATCAACCATGTGTTTAGAGAAGCCAATAGAGTTGCTGACTGTCTCCAAGAAAGGTCATGATCTTTCCATTGGGATCACTATCTTTACTGCGGCCCCCTCTGCTTTACTTCCTTTTATCAGGGATGACTCTCTCGGTGTTATGTTTCCTATAGGGGTTAGGGTTCACGATTCCCCTTTTCTTCCTTTGGTTTCTTCGATCCTGGTTCGATTTCTTCCTCGTGGAGCGCGAGACCTGAAATCTGCCTCCCAGTGCCTGCTTGCCTATAACGGAGGAACCGCCATGGGAGGTGACGGTGCCGTTGAGGACTCTAAGGCTTCATCCGCCGCCGCCGCTGGCGGAGAAGGTGGAGGAGTAGCAGTCAACATCAACATTCGGTGCTCCAACGGGTCCAAGTTTTCCGTTCAGATTGGGCTCGATTCCACCGTCGGGTCTTTCAAGGAGGTCGTCGCTCGCAGCTCCGACATCCCCGCCGATCAACAGCGCTTGATTTACAAAGGTCGCATCCTCAAGGACGATCAAACTCTCCAAAGCTACGGTTTGGAGCCAGATCACACTGTCCATTTGGTTCGTGGCTTGCCTTCTAGTACAGCTGGCGGGACCAATACTACCGGTGCTAACAGCACGGCAACTAATACAAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCTGGTTTGGGAGCTTCACTGTTCCCTGGACTAGGCACCAATGGGATGGGGGGTGGTGGCCTTAATGGCTTGTTTGGAGCGGGTTTCCCAGACCTTGAACAAATGCAGCAACCATTTTTGTCGAATCCCAATATAGTGAGGGAAATAATGAACACACCTGCTATGCAGAATCTGATAAATAATCCTGAGATAGTGCGAAATCTTATAATGAATAACCCCCAGATGCAAGAGCTCATGGATCGGAACCCTGAGCTCGCGCACATACTTAATGATCCCAGCACGCTCCGCCAAACACTGGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAATATTGAATCCTCTCCTGAGGGATTTAACATGCTGAGGCGTATGTATGAAAATGTTCAAGAACCTTTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATGATCAAGTCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCTGATGCAACTTCCCCTGTGCCCAACACTAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTGCTCAAAATAACACCAGAAGGCCAACTACTACTACTGGTGGGGATGCTCGACAGCAGACACCCACTGGCTTAGGGGGGCTTGGTCTTCCGGATCTTGAAGGCATGATGGGTGGTATGCCAGATGCTGCTTTACTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAATCAGATTCTTGGTGTTAATAATGAGCAGCGTGGAATGCCTGATTTAAATTCTCTTAGAGAAGTGATGCAAAACCCAGAGTTTATTCGCCTATTTTCCTCACCTGAGACACTGCAGCAACTCATGTCTTTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCGGCAACAATCGACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCAATGAACAACTTGGGGTTGGAGATGTTATCAAGCATGTTCGGTGGACTCGGAGCTGGCAGCCTAGCCGTTCCGAACAGATCAAATGAACCGCCAGAGCAATTGTATGCTACCCAGCTTACACAGCTTCAAGAGATGGGGTTCTTCGACACGCAAGAGAATATAAGGGCTCTTATTGCGACATCAGGGAATGTTCACGCGGCCGTCGAGCGGCTTTTGGGGAACTCTGGACAGTAG 2019 0.4884 MKNNQLLVRGDSIAWGGSHDGDFNVKSSYLASTGTGLSSSTMCLEKPIELLTVSKKGHDLSIGITIFTAAPSALLPFIRDDSLGVMFPIGVRVHDSPFLPLVSSILVRFLPRGARDLKSASQCLLAYNGGTAMGGDGAVEDSKASSAAAAGGEGGGVAVNINIRCSNGSKFSVQIGLDSTVGSFKEVVARSSDIPADQQRLIYKGRILKDDQTLQSYGLEPDHTVHLVRGLPSSTAGGTNTTGANSTATNTRGAGANEGGGLGGPGLGASLFPGLGTNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDQVRNQSTNPSTTSSDATSPVPNTNPLPNPWSSTGTGGAQNNTRRPTTTTGGDARQQTPTGLGGLGLPDLEGMMGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFIRLFSSPETLQQLMSFQQALLSQLGRQQSTQEPGQTGGGTGSMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0347 672 MobiDBLite consensus disorder prediction 233 254 - -
Aev05g0347 672 SMART CBM 282 323 IPR006636 -
Aev05g0347 672 SMART CBM 336 375 IPR006636 -
Aev05g0347 672 SMART CBM 477 528 IPR006636 -
Aev05g0347 672 SMART CBM 531 566 IPR006636 -
Aev05g0347 672 CDD UBA_PLICs 630 668 - -
Aev05g0347 672 Gene3D - 331 389 - -
Aev05g0347 672 MobiDBLite consensus disorder prediction 411 484 - -
Aev05g0347 672 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 142 672 - -
Aev05g0347 672 MobiDBLite consensus disorder prediction 233 261 - -
Aev05g0347 672 PRINTS Ubiquitin signature 211 232 IPR019956 -
Aev05g0347 672 PRINTS Ubiquitin signature 190 210 IPR019956 -
Aev05g0347 672 Pfam UBA/TS-N domain 630 666 IPR015940 -
Aev05g0347 672 ProSiteProfiles Ubiquitin domain profile. 159 234 IPR000626 GO:0005515
Aev05g0347 672 SUPERFAMILY Ubiquitin-like 159 245 IPR029071 -
Aev05g0347 672 SMART ubq_7 159 230 IPR000626 GO:0005515
Aev05g0347 672 SMART uba_6 630 668 IPR015940 -
Aev05g0347 672 Pfam Ubiquitin family 161 229 IPR000626 GO:0005515
Aev05g0347 672 Gene3D - 157 242 - -
Aev05g0347 672 SUPERFAMILY UBA-like 626 668 IPR009060 GO:0005515
Aev05g0347 672 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 624 669 IPR015940 -
Aev05g0347 672 PANTHER UBIQUILIN 142 672 - -
Aev05g0347 672 MobiDBLite consensus disorder prediction 577 598 - -
Aev05g0347 672 CDD Ubl_Dsk2p_like 160 230 - -
Aev05g0347 672 Gene3D - 612 672 - -
Aev05g0347 672 MobiDBLite consensus disorder prediction 411 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0347 Aev-Chr5 2479377 2485896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0347 159 228 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 5.51e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0347 K04523 - gmx:100797539 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0347 05 2479377 2485896 Aev05g0347 05 2479377 2485896 ECH
Aev05g0347 05 2479377 2485896 Aev01g0122 01 994896 999171 PCT