Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0334 ATGCCGAAGACCAAGACCGTTACTAAGGTCGCCAAGCCCGCTGACACCAGGTTGAAGCGCAAGGCTGCTGCATCTGCACCGAAGCGGCCGACTACTAGCAAGAGAGTCGCTCCCGCTAAGGATCATAACAAGCCGAAGAGGCCTCCCACTGCTTTCTTCGAATTCATGTCTGATTTCAGAGAGCAGTTCAAGAAGGAGTATCCGAACAACAAATCTGTAGCTGTTGTTGCAAAAGCTGGTGGTAGCAAGTGGAGGTTGATGTCTGTTGCTGACAAAGCTCCATATGTTGAGAAGGCGGTTAAAAATAAAAAGGAATATGAGAACAAAATGAGAGCCTACATCAATGGACTGGGTGATAGCAAAAATCCATCTGATGGAGAATCGGACAAATCCAAATCGGAGGTGAATGACGAGGAGGAAGAGGAGGAGTAA 432 0.4769 MPKTKTVTKVAKPADTRLKRKAAASAPKRPTTSKRVAPAKDHNKPKRPPTAFFEFMSDFREQFKKEYPNNKSVAVVAKAGGSKWRLMSVADKAPYVEKAVKNKKEYENKMRAYINGLGDSKNPSDGESDKSKSEVNDEEEEEE* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0334 143 Pfam HMG (high mobility group) box 45 113 IPR009071 -
Aev05g0334 143 Coils Coil 96 116 - -
Aev05g0334 143 CDD HMGB-UBF_HMG-box 45 111 - -
Aev05g0334 143 SUPERFAMILY HMG-box 39 119 IPR036910 -
Aev05g0334 143 Gene3D High mobility group box domain 40 115 IPR036910 -
Aev05g0334 143 MobiDBLite consensus disorder prediction 34 48 - -
Aev05g0334 143 SMART hmgende2 44 115 IPR009071 -
Aev05g0334 143 MobiDBLite consensus disorder prediction 1 50 - -
Aev05g0334 143 MobiDBLite consensus disorder prediction 114 143 - -
Aev05g0334 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Aev05g0334 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 9 143 - -
Aev05g0334 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 9 143 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0334 Aev-Chr5 2413987 2414963 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aev05g0334 HMG_box 6.3e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0334 K25507 - ahf:112797235 119.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0334 05 2413987 2414963 Aev05g0334 05 2413987 2414963 ECH