Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0305 ATGGCTGATGCTAAAGAAAATGAGGAATCTGTCCAGGGCGTTCCCTTGGCTGTGGAAGAAAACGAGCAGTTAGTTGATGCTCAAGTTCAATTTCAACCTGAAGCTGCTTCTGCTTCTGTTCAAGTAGAGGAAATTTCAAATCATGTTGAAAATGGGAAGGAAGAATCACCTTCTGAGGCTAAGGCCGAGCCTCCTTCCGAGGCTAAGGTAGAGCCACTTTCTGAGGCTAAGTCTGAGCCACCTGGTGAGGATAAAACTGTGAAGCCAGAGGCCACTTCCCAGGGCATTCCACAGTATGATGTTCAAAATAGTGAAAATACTCTTAAGTCGGTGTCAGTAGAGGCTGATGCTCAGATTTCAAATAAAACTGAGTGTGAAGAAGCTTCTCACGCAGAGGAGGCTGAAGGTTTTCCTCAGAGTAATAAAGGTGCTGAGAACAATGGTAGTATTTGTCAAAATAATGTTGATACTGCTGAAACACCAGGGGTGGTGAAGCCTGAAGCTGGTGAAGTGGCTAATAGTAAGACTTGCAATCATGCTGCACCTATACCATCAGCTCAGAATGAGTCTGCTACGCCACAAGCTGTTCCTGCCGACACAAAGGTTCAAATCAACAGTGTATTAGAAGCTGAGAATAAGGCTGATGAAAAGCTGGCAGCTACTCCTGCAGATAATGGGACTTCAAATTCAGATCACATGTTTTTCTTGGACGCGGACCATTCTTATGATGGTAATGAGTCAGGAGCAGAGGAGGAGCAATCTGCTTTCATGAAGGAGCTTGAAAATTTCTTTAGGGAAAGGAGCATGGAATTCAAACCTCCTAAGTTTTATGGAGAAGGACTTAATTGTCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGTTATGATAAGGTGACCTCATGCAAGTTATGGCGGCAAGTGGGAGAATCCTTCAAACCTCCTAAGACATGCACCACGGTTTCATGGACTTTTAGGGGGTTTTATGAGAAGGCGCTTCTTGATTATGAAAGGCATAAAATGCCAGGTGGTGAGCTGTATGTGGCTGTAACTTCTCAACCAGAACCTATGAATGTCGACAATCAGGCTACAGCACCAGGTAGAGCAAGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCATTCACAGCGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGCATCTATGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTAAAACGCAAGAAACCATCGTACATGGAGAATGCTGTCAAAGCGGCACGTAGTAAACCATCTAAACCACAATTGGACACCACCGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGTTTTGAGGTGTATGCTTTAGTGCCTGGCCTTCTGCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTGGTTATAAGCGGTGAACCTGAGCATCCCAATAATCCTTGGGGCGTAACCCCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATCGATCCGCATCAGACGTCTGCAGTGGTAACACTGCATGGACAGTTGTTTGTTCGCATCCCATTTGAGCAATCAGAATAG 1635 0.4483 MADAKENEESVQGVPLAVEENEQLVDAQVQFQPEAASASVQVEEISNHVENGKEESPSEAKAEPPSEAKVEPLSEAKSEPPGEDKTVKPEATSQGIPQYDVQNSENTLKSVSVEADAQISNKTECEEASHAEEAEGFPQSNKGAENNGSICQNNVDTAETPGVVKPEAGEVANSKTCNHAAPIPSAQNESATPQAVPADTKVQINSVLEAENKADEKLAATPADNGTSNSDHMFFLDADHSYDGNESGAEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKMPGGELYVAVTSQPEPMNVDNQATAPGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSASMQKREKQLKSINLLKRKKPSYMENAVKAARSKPSKPQLDTTVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRIPFEQSE* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0305 544 ProSiteProfiles ARID domain profile. 250 341 IPR001606 GO:0003677
Aev05g0305 544 Gene3D - 250 345 IPR036431 GO:0003677
Aev05g0305 544 SMART ARID_2 247 337 - -
Aev05g0305 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 26 543 - -
Aev05g0305 544 SUPERFAMILY ARID-like 244 344 IPR036431 GO:0003677
Aev05g0305 544 MobiDBLite consensus disorder prediction 140 159 - -
Aev05g0305 544 CDD ACD_sHsps-like 459 539 - -
Aev05g0305 544 MobiDBLite consensus disorder prediction 91 119 - -
Aev05g0305 544 Pfam Hsp20/alpha crystallin family 461 543 IPR002068 -
Aev05g0305 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 26 543 IPR045147 GO:0006357
Aev05g0305 544 Pfam ARID/BRIGHT DNA binding domain 253 337 IPR001606 GO:0003677
Aev05g0305 544 MobiDBLite consensus disorder prediction 25 161 - -
Aev05g0305 544 MobiDBLite consensus disorder prediction 47 86 - -
Aev05g0305 544 Gene3D - 437 544 IPR008978 -
Aev05g0305 544 CDD ARID 252 337 - -
Aev05g0305 544 SUPERFAMILY HSP20-like chaperones 453 540 IPR008978 -
Aev05g0305 544 MobiDBLite consensus disorder prediction 25 46 - -
Aev05g0305 544 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 444 544 IPR002068 -
Aev05g0305 544 SMART bright_3 251 342 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0305 Aev-Chr5 2223667 2228867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0305 234 542 ARID Transcription Factor Family AT1G76510 61.146 7.86e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aev05g0305 HSP20 2.3e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0305 - - gmx:100791081 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0305 05 2223667 2228867 Aev01g0093 01 794484 798141 PCT