Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0260 ATGGGGTCTAGTGGCAGCAAAGCCACTTCTTCTTGCAGCTCATCTTCGTCTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTTCAATCTTATTGTCTGGGAACAGCATCTGGATCTCATGACAGTGATGATCATGATGACCAGGTGTGTGATCAGAATAAAGTAAATGGAAGTGATGCATACATCAGTGGTAATGAAATAGACTCGGATGAAGTGAAATCAGAATCCTTTAGAAAGGTCAAATATGATAATGAAATGCCTTCTAACACCGACCTTGATGAGTGGGGTCACAATGCATCCAGAAATGGTAGCAGCTCTGCTCATGCTTCTTCAACTCAGTCTTTGAACCCTTCGAGTCGATTCCTTTCGCGTTTTAGCTTCATTCCTGGCAATGTAAGCTTCAAACTAAGTAGAACTACCAGCTTGGGTTCATCAAGGCCTTGCCCTGTTTCTTCTGCAAGTCTTTCAATGTTCAATAGTGAAGATGAGCTTAATATTCATCCAGGCCCCCCAAATCAACAACGTAGTGACTTGATTAATGCATCTTTTGTTAATCAAGTGCCTAGACGGTATCATGAAGGTGCTTCTAATGATTCAAGATCTAATGCCCCAGCATTGGGTTCCCGTGGCAACTTGCAGAGTAGTTCCATAATTTCTCCTATCCAGGACATGGTTAGAGATGCAAATGGTACAAGAGAAGTGGTGGAGATAAACTTGTTTTCTCAAAGAAACCATACAGAGGCAGAAACTGTTGAGAGTAGACATACTGATAGACGAAATGGAGCACGGGAACCTGCTGAACGTAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGACTTCGTGATAGAGTTCTACGCCGATCAACATTATCTGAGTTCACCTTTGGTCCTCTACAACAGGAGAGAGAAGAGAGAGATGCTACTCGGGATAGAGGAAGAGAAGTAGGGGAGAGAGATACAAGAGTGTCACCGCATAGCCGAAATGCTGTGAATTCTCCATCTACATTGTCTAGCTCCTTGTATAGTGTCCAAGACTATGAGGTTGAGACTTCAAGATCAAGGGAAACTAGATATCAGGATCTACTTGAACATAGGTCTAATTTTCTTGAACGGCGAAGAAGAATACGGTCCCAGGTTCGCGCTCTTCAGCGGCTGGGAAGCCGGTTTGAAAATCTTTCGGGACACGATAGATCATGTATCTTGTCCGGTCAACACAGAAATGGTCGTTGTACATGCCGAATCAATAGTCGTGATACCAGCTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATCGTAATGCTGGCTGAAGCCCTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCCCCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTACACAAACATCAAGAAGATGCTGTACAATGCTATATATGTCTTGTGGAGTATGAGGATGGAGACAGAATGCGAGTCCTTCCTTGTCGTCATGAATTCCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTAGAGGGGACATATGTGTATCAGATTCAATGCCAATGGAGAACTAA 1659 0.4316 MGSSGSKATSSCSSSSSFRKGRSKGHRGFQSYCLGTASGSHDSDDHDDQVCDQNKVNGSDAYISGNEIDSDEVKSESFRKVKYDNEMPSNTDLDEWGHNASRNGSSSAHASSTQSLNPSSRFLSRFSFIPGNVSFKLSRTTSLGSSRPCPVSSASLSMFNSEDELNIHPGPPNQQRSDLINASFVNQVPRRYHEGASNDSRSNAPALGSRGNLQSSSIISPIQDMVRDANGTREVVEINLFSQRNHTEAETVESRHTDRRNGAREPAERNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREERDATRDRGREVGERDTRVSPHSRNAVNSPSTLSSSLYSVQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRINSRDTSSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEDAVQCYICLVEYEDGDRMRVLPCRHEFHRTCIDKWLKEIHRVCPLCRGDICVSDSMPMEN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0260 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 544 IPR013083 -
Aev05g0260 552 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 552 - -
Aev05g0260 552 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 552 - -
Aev05g0260 552 SUPERFAMILY RING/U-box 475 545 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 198 219 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 192 219 - -
Aev05g0260 552 Pfam Ring finger domain 496 539 IPR001841 -
Aev05g0260 552 MobiDBLite consensus disorder prediction 67 91 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 1 19 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 246 269 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 1 117 - -
Aev05g0260 552 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Aev05g0260 552 MobiDBLite consensus disorder prediction 248 269 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 92 117 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 300 326 - -
Aev05g0260 552 MobiDBLite consensus disorder prediction 298 340 - -
Aev05g0260 552 SMART ring_2 497 538 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0260 Aev-Chr5 1900222 1903520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0260 219 546 C3H Transcription Factor Family AT5G45290 61.310 8.03e-117 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0260 - - gmx:100815830 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0260 05 1900222 1903520 Aev05g0260 05 1900222 1903520 ECH