Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev05g0229 | ATGGGTTCGGCAGCCTTAGTTGTCTCAGTTTACCACATCATAGCCATTTGTTGCTGCCATCATCAACAACTCATCTCTGCTCACCAAATCCAAACCCAACAACAACAACAGAGTGCTGAACAGAGCACCACCTCCTCTGTTTCACACATGATTCCATCACACAAGTACCACAAGATTGATGATGATGGTGGAACTTGTGCAGTGTGTTTAGGGGACTTTGAGGAAGGTGAAGAGTTGAAGACTCTGCCAGAATGCACACACTCCTTCCACGTCCCATGCATTGATATGTGGCTTCATTCTCATACTAGCTGCCCCATTTGTCGTGCTGCTGCTACTCCTAATTCCCATGGAGGAGGAGGAGGAGGACCACCTTTTCATGGTGCTGATGGGAATCATTATGCAGCAAATCAGAGCATAGGCATGGTGCAAATTGCTGTTGTCCAAAATGGATTGCTACCAAGGTGA | 465 | 0.4688 | MGSAALVVSVYHIIAICCCHHQQLISAHQIQTQQQQQSAEQSTTSSVSHMIPSHKYHKIDDDGGTCAVCLGDFEEGEELKTLPECTHSFHVPCIDMWLHSHTSCPICRAAATPNSHGGGGGGPPFHGADGNHYAANQSIGMVQIAVVQNGLLPR* | 155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev05g0229 | 154 | SMART | ring_2 | 66 | 107 | IPR001841 | - | |
| Aev05g0229 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 108 | IPR001841 | - | |
| Aev05g0229 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 113 | IPR013083 | - | |
| Aev05g0229 | 154 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 1 | 146 | IPR044675 | - | |
| Aev05g0229 | 154 | SUPERFAMILY | RING/U-box | 55 | 113 | - | - | |
| Aev05g0229 | 154 | PANTHER | CHROMATIN REGULATOR PHD FAMILY-RELATED | 1 | 146 | - | - | |
| Aev05g0229 | 154 | Pfam | Ring finger domain | 65 | 108 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev05g0229 | Aev-Chr5 | 1701138 | 1701602 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev05g0229 | 1 | 112 | C3H Transcription Factor Family | AT5G17600 | 38.710 | 3.62e-24 | 94.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev05g0229 | - | - | aip:107639941 | 176.407 |