Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0221 ATGGCTGTGAATCTGACGGAATCCGCGATAACCACGATGTGCAGCGACGATTTCAGTTCCGATGATCTGAAGCCCGTGCTCCAGGTGATCGACGTGAAGCTGGTGCAGTCCCAGCAGCACAGTAGCACCGAGAGGTACCGTTTGGTGCTCTCTGACGGGTCCCACTACCAGCAAGGGATGCTAGCCACGCAGAAGAACGAGTTGGTCAGTTCCGGGAGGCTACAGAAAGGTTCCATTGTTAAGCTCACTCAGTTCGTCTGTAACGTTGTCCAAAGCCGCAAGATTGTTATCATTATTGAGCTAGATGTGGTGCTTGAAAAATGTGATTTGATTGGAGAACCTACCCCGGCACCAAGAAATGCACCTGCACAATCTGCTACTGTTCAATCGGGAGTCACTTCTGGGAATAATACACAGTCATTGAATAGTAATTCACATGCAGGAGGCATGGCTGCTAGACCAAATGTTGCTGCGCCATCTCCTGATCCTCCAAAATTGAACCATCCTGCTAGTAGTGTTTATTCTAGTAGTTCTGACTCGGGAAGATATGGTGCGTCAAATGCCCCTCCTACTTATCCAAAAGTAGAGCCTGGAGCTACTTATCCTAAAGTAGAGACAGGTGCTACTTTACCCAGACCATCTCTGTACAGTGGGTCTCATGGTGATCAGAATATGGGTTTCCGCAATCCTCAATCTGAGACTCCGAGGTCCTTTCAGAATTCCTACACTCGTGCACCTCAGCCCATGCACCGACAACCATCTCCAATGTACAATAACAGAGGGCCTATGGCAAGGAATGATGCTCCCCCCAGGATAATTCCAATAGCTGCATTGAATCCATACCAGAGTATGTGGACTATTAAAGCAAGGGTAACAGCCAAGGGAGAACTCAGGCACTATAATAATGCTCGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGTGAAATCCGGGCAACTTGCTTTAATGCAGTGGCTGATCAGTTTTACGGTGTAATTGAAGCGGGTAAAGTCTATTTGGTTTCGCGGGGAAGTGTAAAGCCAGCACAAAAGAATTTCAATCACCTTCGTAATGATCAGGAGCTGACCCTTGATATTACCTCAGTTATACAGCCATGCCCTGATGATGATCAGTCCATTCCAAAGCAGACATTTAACTTTCGCCCCATTAGTGAAGTTGAAATTCTTGAAAACAACAGCATTTTAGATGTGATTGGTGTGGTGTCTTCCATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGAACGGAAACTCAGAAGAGGACCCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTTTATGGGGAAATTTTTGCAATGCAGAAGGACAGAGGCTCCAAAGTATTTGTGATTCTGGGGCGTTTCCAGTTTTGGCTGCCAAAGCTGTCAGAGTGAATGATTTCAATGGAAAGTCTGTTGGGACCATTGCCACTAGCCAGTTATTTGTGGAGCCTGATTTTGCAGAGGCTTATAAGGTGAAAGAATGGTATGACAAGGAAGGCAAGAATGTTCCAACTATTTCTATTTCCAGGGAAGCATCTAATTTTGGTAAGACCGATGTGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACATCTGAGAAGCCTGATTGGATATCTGTCTGTGCAAGTATATCATTCATCAAGGTTGATAACTTCTGCTACACAGCTTGCCCTATCATGATAGGGGACAGGCAATGCGTCAAAAAAGTGACTAACAATGGAGATGGGAAATGGCGATGTGACAGGTGTGATCAATCTGTTGATGCTTGTGATTACAGGTACATTCTGCAGTTACAGATTCAGGATCACACTGGCGTGACATGGGTTACTGCTTTCCAGGAGTCTGGTGAGGAGATCATGGGTATACCTGCAAAAGACTTGTATTATCTCAAATTTGAAGAACAAGATGATGTAAAAATTGCAGAAGTTATTAGGAAAGTCCTCTTCACTAAATACATGTTCAAGTTAAAAGTAAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCCACAGTTGTAAAAGCAGATAAGGTTAACTTTGCATCCGAATGTAAATTTCTCTTGGATATGATTGATAAGGTTAAGAATGAGAAGGCAGAAGGTACCAATCCTACCTCCACAATTAACAATGTTGGTCTGGGGAGTGTTGGAACCGGACAAGCTATGCCACAGGTTTATAATCCTCCTACAATGAGCAACACTAATGCCAGCAGAGATTACGGTATGCCAGCAAATCAAGCGAGCCATTACGGAAACCAATATAACAGTTCTTATGCTGCAACTGGTGCTCCTGCTTCATACATGTCATGTAACATCTGCGGAAGCTCAGGTCACAGCTCTGCGCAATGCCCGGATAACATGATGAATCGACCTGCACAGTCGACGGGAGGGGGGTATGCAAACACAAACAGGGTGTCTGCTGGATCAGGTGTTGGCTCTGGTGAATGCTTTAAATGTCATCAAACTGGTCATTGGGCAAGAGACTGTCCTGGTGTTGGTGCTGCTCCTCCAGCTTATGGAAGCAATAATGGAATGCAAGGAAGATATGGGATTGCACAAAGGCAACAGTATGGAGGATATTGA 2643 0.4449 MAVNLTESAITTMCSDDFSSDDLKPVLQVIDVKLVQSQQHSSTERYRLVLSDGSHYQQGMLATQKNELVSSGRLQKGSIVKLTQFVCNVVQSRKIVIIIELDVVLEKCDLIGEPTPAPRNAPAQSATVQSGVTSGNNTQSLNSNSHAGGMAARPNVAAPSPDPPKLNHPASSVYSSSSDSGRYGASNAPPTYPKVEPGATYPKVETGATLPRPSLYSGSHGDQNMGFRNPQSETPRSFQNSYTRAPQPMHRQPSPMYNNRGPMARNDAPPRIIPIAALNPYQSMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYGVIEAGKVYLVSRGSVKPAQKNFNHLRNDQELTLDITSVIQPCPDDDQSIPKQTFNFRPISEVEILENNSILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNAEGQRLQSICDSGAFPVLAAKAVRVNDFNGKSVGTIATSQLFVEPDFAEAYKVKEWYDKEGKNVPTISISREASNFGKTDVRKTISQIKDEKLGTSEKPDWISVCASISFIKVDNFCYTACPIMIGDRQCVKKVTNNGDGKWRCDRCDQSVDACDYRYILQLQIQDHTGVTWVTAFQESGEEIMGIPAKDLYYLKFEEQDDVKIAEVIRKVLFTKYMFKLKVKEETFSDEQRVKSTVVKADKVNFASECKFLLDMIDKVKNEKAEGTNPTSTINNVGLGSVGTGQAMPQVYNPPTMSNTNASRDYGMPANQASHYGNQYNSSYAATGAPASYMSCNICGSSGHSSAQCPDNMMNRPAQSTGGGYANTNRVSAGSGVGSGECFKCHQTGHWARDCPGVGAAPPAYGSNNGMQGRYGIAQRQQYGGY* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0221 880 Pfam OB-fold nucleic acid binding domain 285 374 IPR004365 GO:0003676
Aev05g0221 880 Gene3D - 4 117 IPR012340 -
Aev05g0221 880 Pfam Replication protein A OB domain 395 498 IPR031657 -
Aev05g0221 880 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Aev05g0221 880 MobiDBLite consensus disorder prediction 120 149 - -
Aev05g0221 880 CDD RPA1_DBD_C 540 713 IPR013955 -
Aev05g0221 880 SUPERFAMILY Nucleic acid-binding proteins 390 519 IPR012340 -
Aev05g0221 880 Gene3D - 523 714 IPR012340 -
Aev05g0221 880 PANTHER REPLICATION PROTEIN A SUBUNIT 3 751 - -
Aev05g0221 880 MobiDBLite consensus disorder prediction 115 260 - -
Aev05g0221 880 SMART c2hcfinal6 835 851 IPR001878 GO:0003676|GO:0008270
Aev05g0221 880 SMART c2hcfinal6 789 805 IPR001878 GO:0003676|GO:0008270
Aev05g0221 880 MobiDBLite consensus disorder prediction 169 185 - -
Aev05g0221 880 SUPERFAMILY Nucleic acid-binding proteins 271 384 IPR012340 -
Aev05g0221 880 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aev05g0221 880 Gene3D - 384 522 IPR012340 -
Aev05g0221 880 CDD RPA1N 9 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aev05g0221 880 Pfam Replication factor-A C terminal domain 556 707 IPR013955 -
Aev05g0221 880 SUPERFAMILY Nucleic acid-binding proteins 537 714 IPR012340 -
Aev05g0221 880 MobiDBLite consensus disorder prediction 212 254 - -
Aev05g0221 880 CDD RPA1_DBD_B 406 513 - -
Aev05g0221 880 ProSiteProfiles Zinc finger CCHC-type profile. 790 805 IPR001878 GO:0003676|GO:0008270
Aev05g0221 880 CDD RPA1_DBD_A 274 377 - -
Aev05g0221 880 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 232 713 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev05g0221 880 Pfam Zinc knuckle 835 850 IPR001878 GO:0003676|GO:0008270
Aev05g0221 880 Gene3D - 271 381 IPR012340 -
Aev05g0221 880 Gene3D - 786 855 - -
Aev05g0221 880 ProSiteProfiles Zinc finger CCHC-type profile. 836 850 IPR001878 GO:0003676|GO:0008270
Aev05g0221 880 SUPERFAMILY Retrovirus zinc finger-like domains 822 853 IPR036875 GO:0003676|GO:0008270
Aev05g0221 880 PANTHER REPLICATION FACTOR A 1, RFA1 3 751 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0221 Aev-Chr5 1662709 1665820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0221 1 817 Core DNA Replication Machinery Family AT5G45400 52.982 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g0221 K07466 - gmx:100778597 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0221 05 1662709 1665820 Aev05g0221 05 1662709 1665820 ECH