Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g0143 ATGGGCAGAAAGAAACCCAAAGACCCACCTCAAAGCGACGCTGTTTCACCCGCTTCCGGAATTTTCGCCACGCTCTTCGCCGCCGTGCCGGAAGAAACCAACGCTGCCGCCTCCTCCCTATTTTCCGACAACAATCCCTTCCGCAGAAAGCCCCAGCAACCTCCTCCGGTCCCCGAATCAATAGAACAAATTCAAACCCCTAACAATGGCGAATCTGTGAACCGCGGTTCCAGAGAGAACAGGAAGAGAAAAAGTGATGAGGAGCACAAACCTTCTGTCGATTCGGATTCCGCTGTCGAAGCTGTTTCGGAGAAGACGAATAAGAAGAAGCACCGCGAATTCAATGAAGAGATGAAAGGAACCAAATTAACGGAAAAAGAAGGGAAGAAGGAGAAGAAGAGGAAAAGGGAGGAGCTTGAGAGGGAGTGGGAGGAGAAGAAGTACGGTACCACCATAGAGGAGGGAGAGGAGGAAGGTGACAGAAAAGTTGGGGGGAAGAGGAAGACGCTGCATAACCCAGCTGATATGATGGTTTCGAAGGAAGGGTTTGATGATGAGGATAAGCTTTTGAGGACGGTTTTCGTTGGGAACTTGCCACTCAAGGTGAAGAAGAAGACCCTTCTGAAGGAGTTCAAGAAGTTTGGTGAGGTTGAATCCGTGAGGATCCGTTCTGTGCCGATACAGGATACCAAAAAGCCTAGGAAGGGGGCTATTCTTGCGAAGAAGATCAATGATTCTGCTGATAGTGTTCACGCCTACATTGTCTTCAAAACAGAAGAATCTGCTCAGGCTTCTTTGTCTCATAACATGGCAGTGGTTGAAGGCAATCACATTCGTGTAGATCGGGCATGCCCACCCCGCAAGAAACTTAAAGGGGAGAGGACTCCGCTTTATGATAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTCGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTGGTATATCTAACCTGGAGTCCAGTGTAGAAGCTATTAGAGTCATTAGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCCTACGTGATGTTTAAAACAAAGGAAGCTGCTAATTTTGTTCTTAAGAAACGGAAGTTGAAGCTTCGAGACCGAGAGCTGAGACTCAGCCATGCCAAAGCAGATGCCACCCCATCTAAAAGGCCAAACCCGTCACCAGCACAAGCTCCCAGTACACCTGCAAAGAAATTGTCTTTGACTTCTAGATCTCCTTCAAGCAGTATTAACAAGTCAAACAGAAAAGCTAATGCATCTTACCAGGGTGTGCGTGCAACCAAATCCGATGTCAAGAAGAAAGTTCAGGGTGTAGAAAAACCGAAAGAGCGCACGGTGAAAAGACCTTCTGTTGCTGCCAGAAAGGCCAAAGCAAAATCGTTCAAAGATGGCGGTTCGTCAAAACAAACAGGGTTGAAACGTAAGCTTGATAGTCGCACCCCTGATAGCTCCATGAGAACTAAGAAAATGAAAAAGAACAGGTAG 1506 0.4668 MGRKKPKDPPQSDAVSPASGIFATLFAAVPEETNAAASSLFSDNNPFRRKPQQPPPVPESIEQIQTPNNGESVNRGSRENRKRKSDEEHKPSVDSDSAVEAVSEKTNKKKHREFNEEMKGTKLTEKEGKKEKKRKREELEREWEEKKYGTTIEEGEEEGDRKVGGKRKTLHNPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDSADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGERTPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAIRVIRDPHLNVGKGIAYVMFKTKEAANFVLKKRKLKLRDRELRLSHAKADATPSKRPNPSPAQAPSTPAKKLSLTSRSPSSSINKSNRKANASYQGVRATKSDVKKKVQGVEKPKERTVKRPSVAARKAKAKSFKDGGSSKQTGLKRKLDSRTPDSSMRTKKMKKNR* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g0143 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 383 IPR000504 GO:0003723
Aev05g0143 501 Coils Coil 122 142 - -
Aev05g0143 501 MobiDBLite consensus disorder prediction 434 495 - -
Aev05g0143 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 235 IPR000504 GO:0003723
Aev05g0143 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 377 IPR000504 GO:0003723
Aev05g0143 501 MobiDBLite consensus disorder prediction 380 501 - -
Aev05g0143 501 CDD RRM1_RBM34 191 281 IPR034220 -
Aev05g0143 501 MobiDBLite consensus disorder prediction 75 168 - -
Aev05g0143 501 CDD RRM2_RBM34 303 379 IPR034221 -
Aev05g0143 501 PANTHER RNA-BINDING PROTEIN 34 42 499 - -
Aev05g0143 501 Gene3D - 187 290 IPR012677 -
Aev05g0143 501 MobiDBLite consensus disorder prediction 37 168 - -
Aev05g0143 501 Gene3D - 291 390 IPR012677 -
Aev05g0143 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 285 IPR000504 GO:0003723
Aev05g0143 501 SUPERFAMILY RNA-binding domain, RBD 298 393 IPR035979 GO:0003676
Aev05g0143 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 42 499 - -
Aev05g0143 501 SMART rrm1_1 303 379 IPR000504 GO:0003723
Aev05g0143 501 SMART rrm1_1 192 281 IPR000504 GO:0003723
Aev05g0143 501 SUPERFAMILY RNA-binding domain, RBD 183 292 IPR035979 GO:0003676
Aev05g0143 501 MobiDBLite consensus disorder prediction 399 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g0143 Aev-Chr5 1111620 1114321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g0143 193 382 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 1.34e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0143 05 1111620 1114321 Aev05g0143 05 1111620 1114321 ECH