Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev04g3725 | ATGGACACTCTCGATTCGAACCCTAATCCTCCACCTGAAACCCTCTCCTCCTACGATCCATCCTCACACAACACTTCTTCGCTGCCTCATGATTCCAATTTTCAACACTCATCCCAAACCCTAGGTTCCGATGCTGCGAAGACCAACGGCACCACCGAGAACGGCCAGGACGGTGGCGACTCCAATTCGCATCCTCATATTGTGAAACCCTTGCTCTCCGAGAACGGCTTGACCGGCACCACCACCCGCAGCGGCACCACTGACAAGGACCAGTCCGGCGGTGAGGAGGAGACCACCAGCAAGCGCCGTCGACGGAGCCGGTGGGATCCGCAGCCCGAATCCAATGACCAGAGCGGAGGAACTGGAGGAGGTGATGCCGGCGCTGGAACAAAGAAGAGGAAGTCCCGGTGGGCGGATGACGATCCGAAACCGGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCCGAGATTCAGGCTTTGAACAGTAGGTTACTTGAGATTAGTCGAATGTTGCAATCTGGTTTGCCCTTAGATGACCGCCCTGAAGGTGCTCGTTCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGAGAGTATCGTGCTCGTGAGAGGTTGCAGAAGGAGAGGCAAGAGATTATATCTCAAATTATTAAGAAGAACCCTGCTTTCAAGCCCCCAGCTGACTATAGGCCACCAAAGCTTCAGAAGAAGCTTTACATACCAATGAAGGAATACCCTGGTTACAACTTCATTGGGCTGATTATTGGCCCCAGAGGTAACACTCAGAAGCGTATGGAGAAAGAAACTGGTGCTAAGATTGTGATTCGGGGTAAAGGATCTGTGAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTTTTAGTAGAGGCAGAGACTCAGGAATCGCTCGAAGCCGCGGCTGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAACGAGCATAAGAGGCAGCAGCTTAGGGAACTTGCAGCCTTAAATGGTACGATTAGGGATGAAGAGTATTGCCGATTGTGCGGTGAACCTGGTCATCGTCAATATGCATGTCCTACAAGGACTTCAACATTTAAGAGCGAAGTAGTATGTAAACATTGTGGGGATGGTGGACATCCAAGTATAGATTGCCCAGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCTTGGCAGAGCTGGGAGGTTCAGTACCTGAATCTGCAACAAAGCAAACCACTACATTGGCAATTGGTTCAGGCAATTCTGGAACTAATCCCCCTTGGGCTAACAATGCTGCTTCGACTGGTACTTCACCTCACCCTGGCTTAGGGTCTAGTGCTGTCAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTACCTGCCACCCACTCTTGATGACGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTCATGGCAAAAGTTATTAAGGATCGAGTGTCAGGGTTAAGTAAAGGATACGGCTTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCGATTGCGGCTATGAATGGTTATCGCCTTGAGGGTCGGACCATTGCAGTGAGAGTTGCCGGTAAGCCTCCACAGCCTGTTGTACCCCCTGGTCCACCTGCATCTGCTGTGCCCACCTATCCTGTCCCAAGTCAGCCTGTTGGTGCCTATCCATCCCAGCAATATGCTGCTGGTGGTCCTCTTGGGAGTGCTCCTCCCCCGGTGAGCTACGGTGGTACTCCAGTTCCATGGGGACCTCCTGTCCCTCCTCCATATGCTCCTTATGCTCCTCCTCCTCCTGGGTCAACTATGTATCCTCCGATGCAAGGTCAACCTATGCCTCCTTATAGTGTTCAATATCCACCTGTACAGACAGGCCCTCCCGGTGCTCCATCCCAGCCTGCAACCACAAGTGAAGCTCAGCAGAGTTACCCTCCAGGAGTGCAGTCTGACAATACTACTAATACACAATCTGTACCATCAATGTATGGGAACACAGTGCCTTCAATGCCACCAGCAGCTCAACCTACATATCCTGCATCATATGGTTATCCACCTTACTACAATGCAGTTCCTCCGCCACCTCCCCCTACTTCAGATCAGTCCCACAGCATGATGAGTGCGCCTTGGGCCAGTAATCCTCCCTTGCCTCCTCCTGTGTCATCTGCAGAGAAGACAACATATGGCTCGGATCAATCGCAGAGCATTGGAAATGTTCCTTGGGCCACAAATCCACCGCCTCCTCCCCCCTCATCAGCTGAAAAAAAATCATATGGTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA | 2409 | 0.4977 | MDTLDSNPNPPPETLSSYDPSSHNTSSLPHDSNFQHSSQTLGSDAAKTNGTTENGQDGGDSNSHPHIVKPLLSENGLTGTTTRSGTTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSGGTGGGDAGAGTKKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTTTLAIGSGNSGTNPPWANNAASTGTSPHPGLGSSAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAIAAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPVGAYPSQQYAAGGPLGSAPPPVSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYSVQYPPVQTGPPGAPSQPATTSEAQQSYPPGVQSDNTTNTQSVPSMYGNTVPSMPPAAQPTYPASYGYPPYYNAVPPPPPPTSDQSHSMMSAPWASNPPLPPPVSSAEKTTYGSDQSQSIGNVPWATNPPPPPPSSAEKKSYGADSEYEKFMAEMK* | 803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 716 | 730 | - | - | |
| Aev04g3725 | 802 | SUPERFAMILY | RNA-binding domain, RBD | 477 | 569 | IPR035979 | GO:0003676 | |
| Aev04g3725 | 802 | Gene3D | K Homology domain, type 1 | 236 | 364 | IPR036612 | GO:0003723 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 289 | 310 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 89 | 111 | - | - | |
| Aev04g3725 | 802 | CDD | SF1_like-KH | 245 | 361 | - | - | |
| Aev04g3725 | 802 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 481 | 559 | IPR000504 | GO:0003723 | |
| Aev04g3725 | 802 | ProSiteProfiles | Zinc finger CCHC-type profile. | 366 | 380 | IPR001878 | GO:0003676|GO:0008270 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 788 | 802 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 444 | 470 | - | - | |
| Aev04g3725 | 802 | SMART | rrm1_1 | 482 | 555 | IPR000504 | GO:0003723 | |
| Aev04g3725 | 802 | ProSiteProfiles | Type-1 KH domain profile. | 259 | 331 | - | - | |
| Aev04g3725 | 802 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 244 | 370 | IPR036612 | GO:0003723 | |
| Aev04g3725 | 802 | PANTHER | RNA-BINDING PROTEIN RELATED | 747 | 802 | IPR045071 | - | |
| Aev04g3725 | 802 | SUPERFAMILY | Retrovirus zinc finger-like domains | 362 | 408 | IPR036875 | GO:0003676|GO:0008270 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 1 | 145 | - | - | |
| Aev04g3725 | 802 | Gene3D | - | 158 | 235 | - | - | |
| Aev04g3725 | 802 | SMART | kh_6 | 244 | 336 | IPR004087 | GO:0003676 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 74 | 88 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 129 | 143 | - | - | |
| Aev04g3725 | 802 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 747 | 802 | - | - | |
| Aev04g3725 | 802 | Gene3D | - | 365 | 417 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 660 | 701 | - | - | |
| Aev04g3725 | 802 | Pfam | Splicing factor 1 helix-hairpin domain | 133 | 240 | IPR032570 | - | |
| Aev04g3725 | 802 | Pfam | KH domain | 259 | 331 | IPR004088 | GO:0003723 | |
| Aev04g3725 | 802 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 48 | 761 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 633 | 802 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 753 | 770 | - | - | |
| Aev04g3725 | 802 | PANTHER | RNA-BINDING PROTEIN RELATED | 48 | 761 | IPR045071 | - | |
| Aev04g3725 | 802 | SMART | c2hcfinal6 | 391 | 407 | IPR001878 | GO:0003676|GO:0008270 | |
| Aev04g3725 | 802 | SMART | c2hcfinal6 | 365 | 381 | IPR001878 | GO:0003676|GO:0008270 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 633 | 659 | - | - | |
| Aev04g3725 | 802 | ProSiteProfiles | Zinc finger CCHC-type profile. | 392 | 406 | IPR001878 | GO:0003676|GO:0008270 | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 178 | 199 | - | - | |
| Aev04g3725 | 802 | MobiDBLite | consensus disorder prediction | 444 | 468 | - | - | |
| Aev04g3725 | 802 | Gene3D | - | 451 | 563 | IPR012677 | - | |
| Aev04g3725 | 802 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 483 | 552 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev04g3725 | Aev-Chr4 | 34639989 | 34642397 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev04g3725 | 481 | 613 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.714 | 3.43e-12 | 67.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev04g3725 | K13095 | - | gmx:100800982 | 1169.84 |