Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3687 ATGGGTAGGGGTAAGATTGAGATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAGAGAAGAACTGGGTTGCTGAAGAAGGCTCAGGAACTTGCCATTCTATGCGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGAAAACTCTTCGAGTTCTCGAGCTCTGGTATGAAGCGGACACTTTCAAGGTATAACAAATGCACTGATTCTTCAGATGCAGCTGCAGTTGAATATAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAATTGTGAAGCTAGAAACAAAGCAATTACGGCTGTTGGGTAAGGACCTGACAGGATTGAGCTTAAAGGAACTGCAGCATCTTGAGCAACAACTTAATGAAGGGATATTGGCTGTCAAGGAGAGAAAGGAGGAACTTCTTATGGAGCAACTGGAGCAGTCTAGAGTACAGGAACAAAGGGCAATGTTGGAGAATGAAACTTTGAGGAGACAGATTGAGGAGCTTCGATGTCTGTTTCCGGTACCGGAACCTATAGTCCCATCTTATCTTCACTATCACCATATGGAAAGAAAGAGTATGTTCATAGATAATGGTGTTAAGTGTCCCAGCTTGGCCAGTAACTGTGCAAATGAAAAAGGCGATTCAGATACCGCATTGCATTTAGGGTTACCGAGTGATGTTCATAACAAGAGGAAGGTGCATGAGAGAGAAACCTTTTCTAATGATTCAGAGAGTCAAATGGCTCTACTCTGA 768 0.4245 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSDAAAVEYKAEKEDSKMVEILKDEIVKLETKQLRLLGKDLTGLSLKELQHLEQQLNEGILAVKERKEELLMEQLEQSRVQEQRAMLENETLRRQIEELRCLFPVPEPIVPSYLHYHHMERKSMFIDNGVKCPSLASNCANEKGDSDTALHLGLPSDVHNKRKVHERETFSNDSESQMALL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3687 255 Coils Coil 149 176 - -
Aev04g3687 255 PANTHER MADS BOX PROTEIN 1 233 - -
Aev04g3687 255 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 233 - -
Aev04g3687 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev04g3687 255 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aev04g3687 255 Coils Coil 123 143 - -
Aev04g3687 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev04g3687 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev04g3687 255 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Aev04g3687 255 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Aev04g3687 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3687 Aev-Chr4 34369926 34372555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3687 1 248 MADS-box Gene Family AT5G13790 57.430 7.21e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev04g3687 K-box 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3687 - - zju:107417456 381.719