Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3548 ATGGGTGTTTCTAAGTGTGGAAGAAGAAGGAAAACAAACGCTAAGAATTCAATTTCTCGGCCACAAGAATCAAGAAGACATGTATCGTGTAAATTTGATTTAAGTGATACAGAATGGATTACTAAGATTCCAGAATGTCCTGTGTATTACCCTTCAGAGGAAGAGTTCAAGAACCCTTTGGTATATCTTCAGAACATTGCTCCTGAGGCATCTAAATTTGGAATATGCAAAATTGTTTCTCCTATAGTTGCCTCTGTTGCTGCTGATGTTGTCTTAACGAAAGGGAATAAGGGCTTCAAGTTTGAAACTATTGTCCAGCCTCTTCGGCTTTGTGCATGGAATGAGAAAGAGATAATATCTTTTTCTATGAGAGGAAGAAAATACACATATCATGAGTTTGAGGCTTTAGCAAACAAGGCCTTCCACAGAAGATTTTGCAGTTCTGGGGTTCTTTCTTCTTCTTCTTATGCGGAAAATGAGTTCTGGCGTGAGATGGCGAACAGGGAGAAGGGAACGGTTGAGTATGGAGTCAATATTGAAGGCAGTGCCTTTTCATGTGACCCTGATGATAAGCTTGGAAAGAGCAAATGGAATTTGAAGAACTTCTCACGGCTGCCACAATCCACATTGCGATTAGCTGATAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGCATGTTTGCATGGCATGTGGAGGATCACTACTTGTACAGCATCAATTATCACCATTCAGGTGCAAATAAAATTTGGTATGGTGTGCCTTCCGATGCAGCATCTCGATTCGAAAATGTTGTCTTGCATCATGTGTATAGCAATAAAACCATGTCAGAGCGTAGTGAGGATGGGGCTTTCCAGCTTCTTGCACATAAAACAACCATGTTCCCTCCAAATATATTGCTACAACATGATGTAGCTGTTTGCAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCCGGATTTAGTCTCGGTTTTAATTGCGGAGAAGCTGTGAACTTTGCCATAGGTGATTGGTTTCCATTAGGGGCTGCAGCTGGTCGGCGTTACGCCTGTCTCAAAATGCTTCCTATAATTCCATTTGAGGAGCTTCTTTGTAAAGAGGCAATGCAGATTTACAAGTCCTCAAAAGTTAGAGGATCAATGAACAAATCCAAGGACTTGGCATCATATCATGCTATTGTGCTGTCTTTTGTGCATCTTATGCAATTTTATAACAAGACCCTTATGACACTTATTGGTTCAAGAAAATGTTCAGTTTCTTCAAATACAATTGGTACCTTGATATGCAGTGATTGCCACAGAGATTGTTATGTAGCTTACATGATGTGCAAGCACTGTTGTCAATTTCTTCCAATTTGTCTTTACCATGACATTTCATCTCAGAGGTGTTCATGTGGGAAAGAATATACAATCTATAAGAGAGATGATATTTTAGAACTGGAAGATGCTGCTAGAAGTTTTGAACAGGAAAAAGATATTCAATCAAAACTTCAAGGGAAAATGAATTGTGAAGTAGACATCTCCTTTGCTAGAAATGAGCGCATCCAAGATCTCCATAAAAACCTTAGGCATGAAGAAAAAAGAGAAGTGGGAAGCATCAAGTTCAATGTAGAAAGGACTAACAAGACCATAATGAAGCAATATAGAAGGAGAGGACCCTCCAACAGTGATGTTAAACAAGAGCATGAGTAA 1734 0.3968 MGVSKCGRRRKTNAKNSISRPQESRRHVSCKFDLSDTEWITKIPECPVYYPSEEEFKNPLVYLQNIAPEASKFGICKIVSPIVASVAADVVLTKGNKGFKFETIVQPLRLCAWNEKEIISFSMRGRKYTYHEFEALANKAFHRRFCSSGVLSSSSYAENEFWREMANREKGTVEYGVNIEGSAFSCDPDDKLGKSKWNLKNFSRLPQSTLRLADKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPSDAASRFENVVLHHVYSNKTMSERSEDGAFQLLAHKTTMFPPNILLQHDVAVCKAVQKPGEFVITFPRAYHAGFSLGFNCGEAVNFAIGDWFPLGAAAGRRYACLKMLPIIPFEELLCKEAMQIYKSSKVRGSMNKSKDLASYHAIVLSFVHLMQFYNKTLMTLIGSRKCSVSSNTIGTLICSDCHRDCYVAYMMCKHCCQFLPICLYHDISSQRCSCGKEYTIYKRDDILELEDAARSFEQEKDIQSKLQGKMNCEVDISFARNERIQDLHKNLRHEEKREVGSIKFNVERTNKTIMKQYRRRGPSNSDVKQEHE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3548 577 MobiDBLite consensus disorder prediction 558 577 - -
Aev04g3548 577 Gene3D Cupin 46 407 - -
Aev04g3548 577 SMART JmjN_1 45 81 IPR003349 -
Aev04g3548 577 MobiDBLite consensus disorder prediction 1 22 - -
Aev04g3548 577 Pfam jmjN domain 47 79 IPR003349 -
Aev04g3548 577 ProSiteProfiles JmjC domain profile. 194 364 IPR003347 -
Aev04g3548 577 ProSiteProfiles JmjN domain profile. 46 87 IPR003349 -
Aev04g3548 577 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 24 544 - -
Aev04g3548 577 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 544 - -
Aev04g3548 577 SUPERFAMILY Clavaminate synthase-like 160 388 - -
Aev04g3548 577 SMART cupin_9 194 364 IPR003347 -
Aev04g3548 577 Pfam JmjC domain, hydroxylase 224 347 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3548 Aev-Chr4 33512117 33514778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3548 5 506 JUMONJI Transcription Factor Family AT2G34880 30.931 1.15e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aev04g3548 JmjC 2.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3548 - - ahf:112732604 785.408