Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3490 ATGGGAACTAGGGTTAGCGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGGTTCGGCTTCATAACCCCTGACGATGGCGGCGAGGAGCTCTTCGTTCACCAATCCTCCATTCGATCTGAAGGCTTCCGCAGCCTCGCTGAAGGAGAGTCCGTCGAGTTCGTCATCGATTCCGACTCTGACGGACGCACCAAGGCCGTCGATGTCACCGGTCCTGATGGTGCCAACGTCCAGGGCAGCCGTCGCGGCGGAGGCGGCGGTGGAGGAGGCAGAGGGTACGGCGGCGGTCGTGGCGGCGGCGGTGGCGGCTACGGAGGTGGTGGCGGCGGCGGCAGCGGTGCTTGTTACAGCTGCGGTGAGGTGGGACACATGGCTAGGGATTGCAACCAGGGAGGCGGCGGCGGAGGTGGAAGGTACGGTGGAGGTGGTGGCGGTGGCGGCGGGAGCTGCTACAACTGTGGGGAATCTGGGCATTTTGCAAGGGACTGCCCAACCGGTGCTCGTTGA 504 0.6429 MGTRVSGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFVIDSDSDGRTKAVDVTGPDGANVQGSRRGGGGGGGGRGYGGGRGGGGGGYGGGGGGGSGACYSCGEVGHMARDCNQGGGGGGGRYGGGGGGGGGSCYNCGESGHFARDCPTGAR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3490 167 ProSiteProfiles Zinc finger CCHC-type profile. 114 129 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 ProSiteProfiles Zinc finger CCHC-type profile. 149 163 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 PANTHER COLD SHOCK PROTEIN 2 1 166 - -
Aev04g3490 167 MobiDBLite consensus disorder prediction 60 103 - -
Aev04g3490 167 Pfam Zinc knuckle 113 128 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Aev04g3490 167 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Aev04g3490 167 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Aev04g3490 167 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Aev04g3490 167 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Aev04g3490 167 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Aev04g3490 167 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 166 - -
Aev04g3490 167 SUPERFAMILY Retrovirus zinc finger-like domains 105 165 IPR036875 GO:0003676|GO:0008270
Aev04g3490 167 SMART csp_8 6 71 IPR011129 GO:0003676
Aev04g3490 167 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Aev04g3490 167 Gene3D - 2 82 IPR012340 -
Aev04g3490 167 Gene3D - 108 137 - -
Aev04g3490 167 Gene3D - 144 167 - -
Aev04g3490 167 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Aev04g3490 167 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3490 Aev-Chr4 33110558 33111130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aev04g3490 CSD 6.9e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3490 - - gmx:100799708 188.734