Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3392 ATGAAGATCCAATGTGATGTGTGTCACAAAATGGAGGCCTCAGTGTTGTGTCCTGCTGATGAAGCTGCACTATGCCATGCTTGTGATCGTACAATACACCATGCCAACAAGCTTGCTGGCAAACACACACGCTTCTCTCTGCATCACCCCAACTCCAATGACTCACCTCTTTGTGATATCTGCCAAGAGAGGCGTGCATACATATTTTGCCGAGAAGACAGAGCAATACTTTGCAGAGAATGTGACCTTTCTATCCATGGAGTCAACGAACACACCCAGAAACATAATAGGTTTCTTCTCACAGGTGTAAAGCTCTGTGATTCTTCTTCTTCATCATCTTCTTCAGACCCAACATCATTGTCTTCTGATAGAGCCACTACTGCTAGCCCTGAAGCAAGAACATCTCATTCTAATGCAAACAATAATAATAATAATTATTATTATATGGCTAGTGACGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGATACCATACCTGGTTACTGCATGGAAGACCTTCTTGATGCTTCATTTCCACCTAATGGTCTCTGTAAGGATTATGAGTTTCCATTGGAAGTGTGGTCACCACCACAATCCCAAGTTAGATCCCCTCAGCTTAGCACTTGTAATAATATTCATCAAAATGATGATTCTACTTCAGTTGGAGTTAAGGAAATGCCAGGAGCCAACACTGTTGAAGTATACTCGAATTGGGGATACTATGGCTACACAGTTCCTTCAATTAGTCCTCCATTGATCAAAAAATGTAAACGATCTCGTTAA 798 0.4148 MKIQCDVCHKMEASVLCPADEAALCHACDRTIHHANKLAGKHTRFSLHHPNSNDSPLCDICQERRAYIFCREDRAILCRECDLSIHGVNEHTQKHNRFLLTGVKLCDSSSSSSSSDPTSLSSDRATTASPEARTSHSNANNNNNNYYYMASDDTGSVSTSSISEYLIDTIPGYCMEDLLDASFPPNGLCKDYEFPLEVWSPPQSQVRSPQLSTCNNIHQNDDSTSVGVKEMPGANTVEVYSNWGYYGYTVPSISPPLIKKCKRSR* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3392 265 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 204 - -
Aev04g3392 265 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Aev04g3392 265 CDD Bbox1_BBX-like 57 100 - -
Aev04g3392 265 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Aev04g3392 265 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aev04g3392 265 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aev04g3392 265 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aev04g3392 265 MobiDBLite consensus disorder prediction 109 142 - -
Aev04g3392 265 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Aev04g3392 265 CDD Bbox1_BBX-like 5 47 - -
Aev04g3392 265 Gene3D Classic Zinc Finger 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3392 Aev-Chr4 32610221 32611833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3392 1 190 C2C2-CO-like Transcription Factor Family AT1G75540 49.761 2.33e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aev04g3392 zf-B_box 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3392 - - gmx:100790232 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3392 04 32610221 32611833 Aev04g3392 04 32610221 32611833 ECH
Aev04g3392 04 32610221 32611833 Aev05g0445 05 3094671 3096263 ECH