Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3290 ATGCCTCGCCCTTGTTTCCATAAGCTTGTTCTCCCCGCCACTGTCCAATCAAGACAACTGAGAATCCCAGATAATTTTCTGAGGAAATATGGGGGTGAGCTTTCTTCAGTTGCTACCATCTCTGTTCCTGATGGTAGTGTGTGGCGTGTTGGATTGAAAAAGGCAGACAACAAGTATTGGTTTGTTGATGGCTGGTCAGAATTTGTTCAGCGCTATTCCATTGGTGTCGGATACTTTCTAGTATTCAGATACGAAGGGAAGTCATCTTTCAGTATTCATATCTTTAATTTGGCTACTTCTGAGATAAATTACCAAGCAGCCGCTCGAAGCAGTAATGAAGGGGCTTACTTTGCAAATCGTCTTAAAATTTTTGAAGAAATGGAAGATGAAGACTACATTGAATCAGCAGCTGGCAGTACTCAACCAGCATTGCAGAATCTATTCAATGGGTCTAAACTCAATAGGGTCAACTGGGGAGAGGGAGGGAATGCCCTTTCTTCAAGAGATATAGGTGTTCAGTTCAATGCACTTGAGTTCAAAAAGTCTACTGACGAATTGAAATTGCGTGCTTCTTTTGAGGAAAAGGCGAAAAAATCTGCCAAAAAGAAGCGAAAATCAGAGGGCCCGGAAACTTCTGATGAACATGAAGAGGAGACAGAGATGCGCATCAGATTTTATGAAAGTGCTTCTGCGAGGAAAAGGACTGTGACAGCTGAGGAAAGAGAAAAGGCCGTCAATGAAGCGAAAGCATTTGAACCTGCAAATCCTTTCTGCAGAGTCGTCCTGCGTCCCTCCTATTTATACAGGGGATGCATAATGTATCTGCCATCCTGCTTTGCTGAAAAGCATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGCTCCCTGATGGGAAAGAGTGGCCTGTTCGCTGCCTTTACAGATCAGGTCGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTCGCGCTGGATAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGGATGAAAGACGTAGTGCTGCAAGTTACTATATTTCGCGTCATCGAGGAAGAGGAACTGCTGAGCCCTCCCTTGCCGCCACAGAACCAACCTGTGAACCAGGCTAAACTGTTGAGAACTCCTATGCAGCAGCATCACCTCGCCACACCAAAACTGATTAGGAATTAG 1182 0.4467 MPRPCFHKLVLPATVQSRQLRIPDNFLRKYGGELSSVATISVPDGSVWRVGLKKADNKYWFVDGWSEFVQRYSIGVGYFLVFRYEGKSSFSIHIFNLATSEINYQAAARSSNEGAYFANRLKIFEEMEDEDYIESAAGSTQPALQNLFNGSKLNRVNWGEGGNALSSRDIGVQFNALEFKKSTDELKLRASFEEKAKKSAKKKRKSEGPETSDEHEEETEMRIRFYESASARKRTVTAEEREKAVNEAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQLPDGKEWPVRCLYRSGRAKLSQGWFEFALDNNLGEGDVCVFELLRMKDVVLQVTIFRVIEEEELLSPPLPPQNQPVNQAKLLRTPMQQHHLATPKLIRN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3290 393 Pfam B3 DNA binding domain 261 351 IPR003340 GO:0003677
Aev04g3290 393 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Aev04g3290 393 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 139 - -
Aev04g3290 393 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aev04g3290 393 Gene3D - 1 98 IPR015300 -
Aev04g3290 393 PANTHER B3 DOMAIN-CONTAINING 201 382 - -
Aev04g3290 393 PANTHER B3 DOMAIN-CONTAINING 1 139 - -
Aev04g3290 393 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 201 382 - -
Aev04g3290 393 ProSiteProfiles B3 DNA-binding domain profile. 258 353 IPR003340 GO:0003677
Aev04g3290 393 MobiDBLite consensus disorder prediction 203 221 - -
Aev04g3290 393 Gene3D - 235 355 IPR015300 -
Aev04g3290 393 MobiDBLite consensus disorder prediction 197 221 - -
Aev04g3290 393 SMART B3_2 6 98 IPR003340 GO:0003677
Aev04g3290 393 SMART B3_2 258 353 IPR003340 GO:0003677
Aev04g3290 393 CDD B3_DNA 4 96 IPR003340 GO:0003677
Aev04g3290 393 SUPERFAMILY DNA-binding pseudobarrel domain 251 351 IPR015300 -
Aev04g3290 393 CDD B3_DNA 256 351 IPR003340 GO:0003677
Aev04g3290 393 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3290 Aev-Chr4 31972846 31975387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3290 1 352 B3 DNA Binding Superfamily AT3G18990 53.719 1.43e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev04g3290 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3290 - - gmx:100813285 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3290 04 31972846 31975387 Aev04g3290 04 31972846 31975387 ECH