Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3289 ATGCCGCGCCCTTCTTTTCACAAGCTTGTTCTTCCCACAACCGTCCATTCCAGGCAGTTGAGGATTCCAGATGGTTTTTTGAGGAAATATGGTGGTGAGCTTTCTCCAATTGCTACCTTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTTGGATTAAAAAAGATAGACAACAGAATCTGCTTTTTTGATGGATGGCCAGAATTTGTTCAACGCTACTCCATCGGTGTTGGATACTTACTAGTATTCAGATACGAAGGAAAGTCATCCTTCATTGTTCATATCTTTAATTTAGCTACCTCTGAGATAAACTACCAATCAGCCGCCCGAAGCAGTAATGAAGGGGCTTACTTTGCGAATCGTCTTAAATTTTTTGAAGAAATGGAAGATGAAGACTCCTTTGACTTATTTGATTCATCACCTTCCCACCTTACTCCAGGGGCAATGCAGAACAGATTGGCCCCTGGCAAGAATTATACTCCTCCATCACTGCAGAATCTATTTAATGGGTCCAAACTAAACAGCGTAAACTGGGGAGATGGTGGGGATGCCTTTTCTTCAAGAAGTGCCAATTCGCTAGACAATCAGTTTACCAGAGATATAGGTGTTCAGTTTAATGCAGTTGAGTTCAAAAAGTCGACTGACGAATTAAAACTTCGCACTTCTATGGAGGAAAAGGTTAAAAAAACTGCGAAAAAGAAGCGAAAATCAGATGGCTTGGAACCCTCTGATGATCAAGAAGAGGAAGCAGAAATGCGGTTTAGATTCTATGAAAGTGCATCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAAGGCTGTCAATGCTGCAAAAGCTTTTGAACCACTTAACCCGTTCTGCCGGGTTGTCCTGCGGCCCTCGTATCTATACAGGGGATGCATAATGTATCTTCCGTCATGCTTCGCGGAAAAGCATCTGAATGGGGTTTCAGGATTTATCAAACTTCAAACCATTGATGGGAAACAGTGGCCGGTTCGCTGCCTTTATAGAGGAGGCAGAGCCAAGCTAAGCCAGGGGTGGTTTGAATTTGCGGTAGAGAACAACCTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCCTAGAATGAGAGAAGTGGTGCTCCAAGTTACTCTATTTCGAGTTGCTGAGGACGACGGATTATTGAGCCCTCCTTTGCTGCAGAACCAAAATTATAGCCCGACTAGACTTATGAACACTCCTGTGCAGCATCGCATCGGCTCAGGCAAACTGATCAGAAACTAA 1266 0.4392 MPRPSFHKLVLPTTVHSRQLRIPDGFLRKYGGELSPIATFSVPDGSVWRVGLKKIDNRICFFDGWPEFVQRYSIGVGYLLVFRYEGKSSFIVHIFNLATSEINYQSAARSSNEGAYFANRLKFFEEMEDEDSFDLFDSSPSHLTPGAMQNRLAPGKNYTPPSLQNLFNGSKLNSVNWGDGGDAFSSRSANSLDNQFTRDIGVQFNAVEFKKSTDELKLRTSMEEKVKKTAKKKRKSDGLEPSDDQEEEAEMRFRFYESASARKRTVTAEEREKAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQTIDGKQWPVRCLYRGGRAKLSQGWFEFAVENNLGEGDVCVFELPRMREVVLQVTLFRVAEDDGLLSPPLLQNQNYSPTRLMNTPVQHRIGSGKLIRN* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3289 421 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Aev04g3289 421 SUPERFAMILY DNA-binding pseudobarrel domain 282 381 IPR015300 -
Aev04g3289 421 MobiDBLite consensus disorder prediction 222 248 - -
Aev04g3289 421 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aev04g3289 421 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 411 - -
Aev04g3289 421 Gene3D - 1 98 IPR015300 -
Aev04g3289 421 CDD B3_DNA 286 381 IPR003340 GO:0003677
Aev04g3289 421 MobiDBLite consensus disorder prediction 233 248 - -
Aev04g3289 421 ProSiteProfiles B3 DNA-binding domain profile. 288 383 IPR003340 GO:0003677
Aev04g3289 421 Gene3D - 265 385 IPR015300 -
Aev04g3289 421 PANTHER B3 DOMAIN-CONTAINING 1 411 - -
Aev04g3289 421 CDD B3_DNA 4 96 IPR003340 GO:0003677
Aev04g3289 421 Pfam B3 DNA binding domain 291 381 IPR003340 GO:0003677
Aev04g3289 421 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Aev04g3289 421 SMART B3_2 288 383 IPR003340 GO:0003677
Aev04g3289 421 SMART B3_2 6 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3289 Aev-Chr4 31967057 31969890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3289 1 387 B3 DNA Binding Superfamily AT3G18990 51.145 4.56e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev04g3289 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3289 - - adu:107476734 656.366