Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev04g3240 | ATGGAGTCCGAGGATGATATGCACGACGCGAACGACGTCGAATCGCTCGACGACGATTTCTACAGCGGCGACACCGAGGACGCTCCCATGGATTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGAAGCCGATGATTCCGATAAGCTCGAATCTCGCCGCTCCGAGCAAAATTTTACCATCTTGAAGGAATCGGATATTAAGAAAAGGCAGGAAGAGGACATAGCTAGAGTAGCAACTGTTCTTTCCATAACAACAGTTTCTGCAAGCATACTACTTCGCCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCTTGGTTTGCTGATGAGGATCGAGTCCGTAGAACAGTTGGCTTATTGGAGAAGCCAGTTGTTGAGCATCATAATGCTAGAGAGCTTACTTGCGGCATCTGTTTTGATAATTATCCTCGTGCTAGGATTCAAATGGCTTCTTGTGGTCATCCCTTCTGTACCTCATGCTGGGAAGGATATATCAGCACGTCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCACTTGCGGAGCTGCTGTTGATCAAGATATGATTAGTCTATTAGCATCTGAAGAAGATAAACAAAAGTATAGCCGTTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGCGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAGTTATGATGTTTCATGCTTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTTGATTGTGGCACTGTAGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAATATGAACTGGATACTTGCAAACTCGAAGCCATGTCCGAAGTGCAAACGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAGGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAGATGGCAAAGAATTCTTTGGAGAGGTACACACATTATTACGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTTCATCAGATGCAAACAGTTCATATTGAGAAGCTTAGTGACATACAATGCCAGCCTGAGTCACAGCTCAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGTAGACGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCGGAGCATGAGCATGCAAAAAAGCAATTCTTCGAGTACTTACAAGGGGAAGCAGAATCTGGTCTGGAGCGACTCCATCAATGTGCTGAAAAGGAACTACAGCCATTCCTCAATGCTGATGAGGGCCCATCTAGAGAATTCAATGACTTCCGTACAAAGCTCGCTGGACTGACTAGTGTGACTAGGAACTACTTTGAGAATTTAGTTAGGGCGTTGGAGAATGGTCTAGCAGATGTGGATAGCAACGGAGCAGCCTCCAGCAAAGCAGCAAGCTCAAAAAATGCTGCCGGGAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACCCTACGAAACAGCATGTCCAGCAGGATGTCTGATGATAATACTCATTGGAGCTGCGAGCATTGTACCTTTGCAAATGTCAAAGCTGCCACCGCATGCCAGATGTGCAATCGCCCACGCCGTTGA | 1782 | 0.4579 | MESEDDMHDANDVESLDDDFYSGDTEDAPMDYYSDYDDDADDYFDEADDSDKLESRRSEQNFTILKESDIKKRQEEDIARVATVLSITTVSASILLRHHNWSVSKVHDAWFADEDRVRRTVGLLEKPVVEHHNARELTCGICFDNYPRARIQMASCGHPFCTSCWEGYISTSINDGPGCLMLRCPDPTCGAAVDQDMISLLASEEDKQKYSRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGSYDVSCFCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLNADEGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKAASSKNAAGSSSKGRGGRGKGTLRNSMSSRMSDDNTHWSCEHCTFANVKAATACQMCNRPRR* | 594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev04g3240 | 593 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 183 | IPR001841 | - | |
| Aev04g3240 | 593 | SMART | ibrneu5 | 274 | 344 | IPR002867 | - | |
| Aev04g3240 | 593 | SMART | ibrneu5 | 208 | 270 | IPR002867 | - | |
| Aev04g3240 | 593 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Aev04g3240 | 593 | Pfam | IBR domain, a half RING-finger domain | 287 | 335 | IPR002867 | - | |
| Aev04g3240 | 593 | Pfam | IBR domain, a half RING-finger domain | 208 | 270 | IPR002867 | - | |
| Aev04g3240 | 593 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 15 | 539 | IPR031127 | GO:0004842|GO:0016567 | |
| Aev04g3240 | 593 | SUPERFAMILY | RING/U-box | 209 | 277 | - | - | |
| Aev04g3240 | 593 | SMART | zf_4 | 567 | 591 | IPR001876 | - | |
| Aev04g3240 | 593 | Gene3D | - | 563 | 593 | - | - | |
| Aev04g3240 | 593 | Gene3D | - | 266 | 522 | - | - | |
| Aev04g3240 | 593 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Aev04g3240 | 593 | CDD | RING-HC_RBR_TRIAD1_like | 139 | 189 | - | - | |
| Aev04g3240 | 593 | MobiDBLite | consensus disorder prediction | 525 | 566 | - | - | |
| Aev04g3240 | 593 | ProSitePatterns | Zinc finger RanBP2-type signature. | 569 | 588 | IPR001876 | - | |
| Aev04g3240 | 593 | ProSiteProfiles | TRIAD supradomain profile. | 135 | 348 | IPR044066 | - | |
| Aev04g3240 | 593 | Pfam | Ariadne domain | 357 | 520 | IPR045840 | - | |
| Aev04g3240 | 593 | SUPERFAMILY | RING/U-box | 135 | 220 | - | - | |
| Aev04g3240 | 593 | MobiDBLite | consensus disorder prediction | 525 | 542 | - | - | |
| Aev04g3240 | 593 | SUPERFAMILY | Ran binding protein zinc finger-like | 564 | 592 | IPR036443 | - | |
| Aev04g3240 | 593 | SUPERFAMILY | RING/U-box | 289 | 337 | - | - | |
| Aev04g3240 | 593 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 15 | 539 | - | - | |
| Aev04g3240 | 593 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 219 | IPR013083 | - | |
| Aev04g3240 | 593 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 564 | 593 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev04g3240 | Aev-Chr4 | 31669925 | 31674639 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev04g3240 | 17 | 592 | ARIADNE family | AT1G65430 | 70.205 | 0.0 | 839 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev04g3240 | K11968 | - | gmx:100810427 | 1064.68 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aev10g1744 | 10 | 19492401 | 19496993 | Aev04g3240 | 04 | 31669925 | 31674639 | PCT |