Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3160 ATGAACTTCGATACTACGCAGCCACAAACGGCGTCGTTTTGGTGCTACAGCTGCACGCGTTTCGTCCACCTCGTCACCCACGCCAACAACTCCATCGCCTGCCCTCACTGCCAAAGCGGTTTCGTCGAACAGGTCCGACCCGACCCTTCACCTGACCACGCTTTTAGCCCCTTCTCCACCGCCGATGACTTCTCTGATCTTCGTCGTCAAGGATTTCGCCGTCGCCGTCGTAGCGCCGGTGGAAACCGCTCTCCTTTCAACCCCGTGATTGTGCTCCGCGACGGAACGGGCGGGGATCGCGACGGGAATAGCGCCGCCTTCGAGCTCTACTACGACGACGGCGATGGCTCGGGTCTTAGGCCGCTTCCGCCGGCGATAGCGGAGTTTTTGTTAGGTTCGGGATTTGATCGGCTTCTGGAGCAGTTCGCGCAGATTGAGACGAACGCCTTTGGCCGGCCGGAGAATCCGCCGGCGTCGAAAGCGGCAATCGAGGCGATGCCGACAGTGGAGATCGAGGAGGCGCATATGCTCGCTGAAGCGCATTGCGCCGTGTGCAAGGAAGCCTTCGAGCTACGCGCGGAGGCGCGTGAGCTTCCGTGCAAGCACATCTACCACTCCGATTGCATCGTTCCGTGGCTCTCACTTCGGAATTCGTGCCCTGTATGCCGCCACGAGCTTCCTTCAGATCAGAATCTCTCGATTTCCGGTTCAATTGACGAAGAATCGATCGGATTAACGATTTGGAGGCTTCCAGGAGGTGGATTTGCCGTCGGGAGATTTTCTGGCGGCCGGAGAGCCGGCGAGAGCCATCTTCCGGTGGTGTACACCGAGATGGACGGAGGATTGAACTCTAACGGAGCTCCTAGAAGATTCTCTCGTGCTGCGAGGAGCCATAGGGTTAGGGAAAGTCGTGGAATCGGTAGGGTTTTTCGTAATTTTGTGTCGTTTTTTGGGAGAATTGGTTCTAGGTCTGGTTCTTCTTCTTCTTCGCGTTCTAGTTCAGGGCAATTGGGTAGAAGAAGTAGCCAATTGAGTTCGATGTTCAGTAGGAGGAGGACTTGGGTGTTGGAAGATTGA 1077 0.5645 MNFDTTQPQTASFWCYSCTRFVHLVTHANNSIACPHCQSGFVEQVRPDPSPDHAFSPFSTADDFSDLRRQGFRRRRRSAGGNRSPFNPVIVLRDGTGGDRDGNSAAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFAQIETNAFGRPENPPASKAAIEAMPTVEIEEAHMLAEAHCAVCKEAFELRAEARELPCKHIYHSDCIVPWLSLRNSCPVCRHELPSDQNLSISGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGESHLPVVYTEMDGGLNSNGAPRRFSRAARSHRVRESRGIGRVFRNFVSFFGRIGSRSGSSSSSRSSSGQLGRRSSQLSSMFSRRRTWVLED* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3160 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 229 IPR013083 -
Aev04g3160 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 8 306 - -
Aev04g3160 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 306 - -
Aev04g3160 358 SMART ring_2 182 222 IPR001841 -
Aev04g3160 358 SUPERFAMILY RING/U-box 162 229 - -
Aev04g3160 358 Pfam Protein of unknown function (DUF1117) 243 351 IPR010543 -
Aev04g3160 358 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Aev04g3160 358 CDD RING-H2_RNF126_like 182 223 - -
Aev04g3160 358 MobiDBLite consensus disorder prediction 74 97 - -
Aev04g3160 358 Pfam Ring finger domain 181 223 IPR001841 -
Aev04g3160 358 MobiDBLite consensus disorder prediction 321 344 - -
Aev04g3160 358 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3160 Aev-Chr4 31137254 31138330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3160 121 231 C3H Transcription Factor Family AT5G01980 47.748 8.89e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3160 - - gmx:100792874 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3160 04 31137254 31138330 Aev04g3160 04 31137254 31138330 ECH
Aev10g1792 10 19835960 19837075 Aev04g3160 04 31137254 31138330 ECH
Aev10g1792 10 19835960 19837075 Aev04g3160 04 31137254 31138330 PCT