Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3130 ATGGAGGACGACGAGAAAGCGAGCACATCATCAGTAGTGGAGAGGTTGATCGAGCTGGTGAATGAGATTGGTGCCATCTCCGATTACAGGCCCATGGTTAAGAAACAGTACAACAACTTGGCCCGGAGGCTCAAGCTTCTTACTCCCATGTTCGAAGAGATTAAGGACATGAAGGAACAACCTTTGCCTCTCCCTCATGATACTTTGAAAGCCATGCTTCACTTTAAGGATGCTCTTCAATCCGCCAGGGACATCCTCAGATTCGGGAGTGAAGGCAGTAAGATTTACATGGTCCTTGAGAGGGACCAAATTATGAGTAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCATTGGCTGGAATTTCCTATGATAAACTCGACATATCCGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTTCCCAGTTCAAAAGAGCCAAAGGGAGGGTTGATGAGCCTGACATCAAGTTGTATGAGGATATGTTGTCCCTTTACAACAATAACAGCGATGCAGCGACAGATCCGGCTGTTATACGTCAATTAGCTGAAAAATTGCAATTGATGGGGGTAGCTGATCTTACCCAAGAGTCACTTGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCAGGGGCACGCATAGAGAAGATTTCAATGTTATTGAAGAAGATAAAAGATTATGTTCAGATGGAAAATCTAGTAACAATGGATGATAATGTAGGGGGAAAAGGCCATTCTTCAAGAGCCAGTGGACAAGAGACAGATGAGAGGAATCATCAGACACCGGTTATCCCTGATGATTTTCGATGTCCAATTTCTCTGGAATTGATGAAGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTCTATTGAGAAGTGGTTACAAGCTGGGCACGGGACATGCCCGAAAACACAGCAAAGTCTCACTAGTACTGTTCTCACTCCCAACTTTGTCCTAAGAAGCCTCATTGCACAGTGGTGTGAAGCCAATGGCATAGAACCACCAAAACGGCCTAGCAATTCTGAACCAAGTAAATCAACATCAGCTTACGCCCCGGCCGAGCGAAGCAAGATCGAAAACCTCCTCCAAAGGCTCACTTCTGGCAGTCCTGAAGACCAAAGATCAGCTGCAGGGGAGATCCGCCTCCTTGCGAAGCGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCCGGTGCAATACCTCTCCTTGTTAGTCTCCTCTCAGTGCCTGATTCTCGCACTCAAGAGAATGCAGTTACTGCCCTTCTCAATCTTTCCATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCGATTCCAGGCATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTAGGGAGAATGCGGCAGCAACACTCTTCAGCCTTTCGGTTATAGACGAAAATAAGGTCACAATTGGTTCTTCAGGAGCAATACCACCACTAGTGACACTTCTGAATGAAGGTACACAGAGAGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGTATATACCAAGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGCTATTCCAACACTGATGCAACTTCTGACAGAGCCTAATGGAGGAATGGTTGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCAGATGGGAAGGCTTCAATTGGCGCCGCCGAGGCTGTGCCGATACTGGTAGAGTTTATTCGGAACAGATCGCCGAGGAACAAAGAGAATGCAGCTGCAGTTTTAGTGCACCTTAGTTCTGGAGATCAACAATATCTTGCACAGGCACATGAGCTAGGTGTGATGGAGCCATTGTTGGATTTGGCTCACAATGGCACGGACAGAGGAAAAAGAAAGGCGTCTCAGTTGCTAGAACGTATGAGTAGGTTCATTGAGCAGCAGCAGAAACAGGAGGAGGAGGAGGAGGAGGTGGCGGTTCCGGCACAAACCGAACCCCTAGCACAGAATGAGGATGCTCAACTGCTTCCTCCTCTTCTTACTAATGTTGATGATACCTAA 2049 0.4666 MEDDEKASTSSVVERLIELVNEIGAISDYRPMVKKQYNNLARRLKLLTPMFEEIKDMKEQPLPLPHDTLKAMLHFKDALQSARDILRFGSEGSKIYMVLERDQIMSKFYEVTARLEQSLAGISYDKLDISDEVKEQVELVLSQFKRAKGRVDEPDIKLYEDMLSLYNNNSDAATDPAVIRQLAEKLQLMGVADLTQESLALHEMVAASGGDPGARIEKISMLLKKIKDYVQMENLVTMDDNVGGKGHSSRASGQETDERNHQTPVIPDDFRCPISLELMKDPVIVSTGQTYERSSIEKWLQAGHGTCPKTQQSLTSTVLTPNFVLRSLIAQWCEANGIEPPKRPSNSEPSKSTSAYAPAERSKIENLLQRLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLNEGTQRGKKDAATALFNLCIYQGNKGKAVRAGAIPTLMQLLTEPNGGMVDEALAILAILSSHPDGKASIGAAEAVPILVEFIRNRSPRNKENAAAVLVHLSSGDQQYLAQAHELGVMEPLLDLAHNGTDRGKRKASQLLERMSRFIEQQQKQEEEEEEVAVPAQTEPLAQNEDAQLLPPLLTNVDDT* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3130 682 SUPERFAMILY RING/U-box 254 342 - -
Aev04g3130 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Aev04g3130 682 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Aev04g3130 682 CDD RING-Ubox_PUB 270 312 IPR045210 -
Aev04g3130 682 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 655 - -
Aev04g3130 682 Pfam U-box domain 266 336 IPR003613 GO:0004842|GO:0016567
Aev04g3130 682 MobiDBLite consensus disorder prediction 642 682 - -
Aev04g3130 682 PANTHER U BOX DOMAIN-CONTAINING 10 655 - -
Aev04g3130 682 MobiDBLite consensus disorder prediction 240 267 - -
Aev04g3130 682 MobiDBLite consensus disorder prediction 251 265 - -
Aev04g3130 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 339 IPR013083 -
Aev04g3130 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 569 IPR000225 GO:0005515
Aev04g3130 682 Coils Coil 630 650 - -
Aev04g3130 682 MobiDBLite consensus disorder prediction 337 359 - -
Aev04g3130 682 MobiDBLite consensus disorder prediction 343 359 - -
Aev04g3130 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Aev04g3130 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Aev04g3130 682 Gene3D - 350 669 IPR011989 -
Aev04g3130 682 SUPERFAMILY ARM repeat 364 646 IPR016024 -
Aev04g3130 682 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
Aev04g3130 682 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Aev04g3130 682 Gene3D - 8 124 IPR036537 GO:0007166
Aev04g3130 682 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Aev04g3130 682 SMART arm_5 434 474 IPR000225 GO:0005515
Aev04g3130 682 SMART arm_5 599 639 IPR000225 GO:0005515
Aev04g3130 682 SMART arm_5 475 515 IPR000225 GO:0005515
Aev04g3130 682 SMART arm_5 557 597 IPR000225 GO:0005515
Aev04g3130 682 SMART arm_5 516 556 IPR000225 GO:0005515
Aev04g3130 682 SMART arm_5 393 433 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3130 Aev-Chr4 30936281 30939835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3130 3 660 U-box Gene Family AT3G46510 69.127 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3130 - - gmx:100812160 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3130 04 30936281 30939835 Aev04g3130 04 30936281 30939835 ECH