Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3097 ATGATCATAGTATTGATTCTCTTACTTATACTGAGTTACTACACAATTTTGAAGCCTCTCTTATCCTTAATTGGTGGCACAAACCATGGAAGAAGAATCTCAAGGAACAATGTTCAAAGGAGACTTCTAGATGAGTCCATTAATGTTGATGACACTTCTCAACAGCTTCAAAGCCATGGTTTGGATTTCACTGTGGTTCACTCTCTTCCATTGCACCAATATAAGAAAAGTGGGGATGAGCTGATAATTAACACAGACTGTGCTATTTGTCTTGGGGAGTTTGAAGAAGGGGAGTGGCTAAAACATCTTCCTAGTTGCTCCCATGGCTTCCATGTTCTTTGCATTGACATGTGGTTTCGGTCTCATTCGAGTTGTCCTCCTTGCAGATCAAATGTACAGAACGATCTCGCTGATAGCATCGACTGCCATGTATCTTCTTACACATTGCTAGAGAATTTGAGGAGGGAAAACTTTTCCCAGGAAAGGGATGAACATTTATAA 501 0.4032 MIIVLILLLILSYYTILKPLLSLIGGTNHGRRISRNNVQRRLLDESINVDDTSQQLQSHGLDFTVVHSLPLHQYKKSGDELIINTDCAICLGEFEEGEWLKHLPSCSHGFHVLCIDMWFRSHSSCPPCRSNVQNDLADSIDCHVSSYTLLENLRRENFSQERDEHL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3097 166 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Aev04g3097 166 SUPERFAMILY RING/U-box 86 135 - -
Aev04g3097 166 CDD RING-H2_EL5_like 86 129 - -
Aev04g3097 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 135 IPR013083 -
Aev04g3097 166 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 134 - -
Aev04g3097 166 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 134 IPR044675 -
Aev04g3097 166 SMART ring_2 87 128 IPR001841 -
Aev04g3097 166 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3097 Aev-Chr4 30695221 30695721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3097 4 132 C3H Transcription Factor Family AT1G72220 33.835 1.51e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3097 - - gmx:121172630 165.622