LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g3059	ATGTTCGATCTTAATCTGAATGTGAACTCGAACGATTCCACTCAGAACGGCGACTCTGCGATGCTGGTGTCGGAGAAACTTCTTGAAGGTTCGTGGAACCAAATGGAGGAATCCGGAACCTCGAATTCGTCCGTCGTGAATGCGGAAGGGTCCAGCAACAACGGCGGCGGCGACGAGGACTCGTGCTCCACGCGCGTCGTCGCCGAGGACAACACGCTCACCTACAATTTCGACATCCTGAAGGTGGAGGCATCGAACGACGTCGTCGTGACGAAGGAGCTGTTTCCGGTGAACGCTGACTCCGCGAAATGGCAGAATACGTCGTCGTTTTCAGGAACGAATGGTTCGTTGGATCTATCGTTCGATCGCAAAGGTGAGACGATGAAAATGGTTCAGGTTCAGCCTCAGCAGCAACCAGCTAAGAAGAGTAGGAGGGGACCAAGGTCTCGTAGCTCGCAGTACAGAGGAGTCACCTTCTACAGAAGAACCGGGAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGCGGATTTGACACTGCTCATGCCGCTGCTAGAGCCTATGATCGAGCGGCTATTAAGTTCAGGGGAGTTGAAGCTGACATCAATTTCAGCCTGAATGATTATGATGATGATCTCAAACAGATGAAGAATCTATCCAAAGAGGAATTCGTTCATATACTTCGCCGCCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAGTACAGAGGAGTAACTCTCCACAAGTGTGGCCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCTAGTTCATATGAAGGAGAGGTGAAATCTGCAGCCACCAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGCATAGCAACCCCAGGGCAAGGTCTCAAAGAAAATAGGGGGCAACTTCAGTTCCCCTTTGTCCCTTACAGCATCCATGGTGGAAGAACAAGGATGGAAACCAATGTTAATAACTCAGTAATTGGTGATCCATCTTTGAAAAGGTTGGTTGCAACTGAGCGTCCTTCTGTGTGGAATGGCATGTATCCTAATTTCTTTCCCAACGAGGAAAGAGTGGATAGAATCAGCATAGATCATTCGAAAGGACTCTCCAATTGGCCATGGCAAACCCATGGGCAAGTCACTGCTACCCCAGTGCCTTCATTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCACCTAATTCAATGTTTCAAACCAAACCCATGAACTCATCATCAACTCCTCAGAGTCTCTGTTTCACTTCATCCAACGCACCTCTCACCAATGCATCTCAGTATTATTACCAGGCTAAGCCCCCTCAGGCACCACCCTAG	1458	0.4856	MFDLNLNVNSNDSTQNGDSAMLVSEKLLEGSWNQMEESGTSNSSVVNAEGSSNNGGGDEDSCSTRVVAEDNTLTYNFDILKVEASNDVVVTKELFPVNADSAKWQNTSSFSGTNGSLDLSFDRKGETMKMVQVQPQQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLNDYDDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSSYEGEVKSAATNEGGSHNLDLNLGIATPGQGLKENRGQLQFPFVPYSIHGGRTRMETNVNNSVIGDPSLKRLVATERPSVWNGMYPNFFPNEERVDRISIDHSKGLSNWPWQTHGQVTATPVPSFSAAASSGFSISPNSMFQTKPMNSSSTPQSLCFTSSNAPLTNASQYYYQAKPPQAPP*	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g3059	485	PRINTS	Ethylene responsive element binding protein signature	246	257	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	PRINTS	Ethylene responsive element binding protein signature	284	304	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	ProSiteProfiles	AP2/ERF domain profile.	245	302	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	MobiDBLite	consensus disorder prediction	131	154	-	-
	Aev04g3059	485	SUPERFAMILY	DNA-binding domain	244	303	IPR016177	GO:0003677
	Aev04g3059	485	CDD	AP2	153	208	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	Pfam	AP2 domain	153	201	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	Pfam	AP2 domain	244	294	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	456	-	-
	Aev04g3059	485	SMART	rav1_2	153	215	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	SMART	rav1_2	245	308	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	456	-	-
	Aev04g3059	485	CDD	AP2	244	304	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	MobiDBLite	consensus disorder prediction	33	63	-	-
	Aev04g3059	485	ProSiteProfiles	AP2/ERF domain profile.	153	209	IPR001471	GO:0003700\|GO:0006355
	Aev04g3059	485	SUPERFAMILY	DNA-binding domain	152	210	IPR016177	GO:0003677
	Aev04g3059	485	Gene3D	AP2/ERF domain	244	303	IPR036955	GO:0003700\|GO:0006355
	Aev04g3059	485	Gene3D	AP2/ERF domain	152	211	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g3059	Aev-Chr4	30325944	30329189	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g3059	124	328	AP2-EREBP Transcription Factor Family	AT4G36920	79.808	8.68e-100	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Aev04g3059		AP2	2.9e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g3059	K09284		-	gmx:100788303	617.076

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev04g3059	04	30325944	30329189	Aev04g3059	04	30325944	30329189	ECH
	Aev10g1873	10	20286831	20290303	Aev04g3059	04	30325944	30329189	ECH
	Aev10g1873	10	20286831	20290303	Aev04g3059	04	30325944	30329189	PCT